Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02159 ATGGTGCTCTCCAAAACTTTCTCAGAATCGGATGTCTCTGTTCATTCCACCTTTGCCTCTCGCTATGTGCGGGACTCTGCTCCAAGATTCACCATGCCCGAAAACTCCATGCCCAAGGAGGCTGCTTTTCAGATCATCAACGACGAGCTCATGCTCGATGGCAACCCCAGGCTCAATTTGGCTTCCTTCGTCACCACTTGGATGGAGCCCGAGTGCGATAAGCTGATTATGGACTCTGTCAACAAGAACTACGTCGATATGGACGAGTACCCTGTCACCACCGAGCTTCAGAACCGATGTGTCAACATGATTGCCCATCTCTTCAACGCTCCCTTGGGAGACTCCGACACGGCGGTCGGAGTTGGCACGGTGGGATCCTCGGAGGCCATCATGTTGGCGGGACTGGCCTTCAAGAGGAAGTGGCAGAACAAGCGGAAAGCAGAGGGGAAGCCTTATGATAAACCGAACATCGTGACAGGGGCGAATGTTCAAGTTTGTTGGGAGAAATTCGCGAGGTACTTTGAAGTGGAGCTGAAGGAAGTGAAGGTGAGAGAAGGGTATTACGTGATGGACCCTGTCAAGGCGGTGGAGATGGTGGATGAGAACACCATTTGCGTCGCCGCCATTTTGGGGTCGACTTACAATGGGGAATTCGAAGATGTGAAGCTGTTGAATGATTTGTTGGTGGAGAAGAACAGGAAAACAGGGTGGGATACTCCCATTCACGTGGATGCTGCGAGTGGCGGATTCATAGCGCCGTTTTTGTATCCAGACCTCGAATGGGACTTCCGGCTTCCGTTGGTGAAGAGTATCAATGTGAGTGGGCACAAGTATGGGCTTGTCTACGCCGGAATTGGATGGGTCATTTGGAGAACCAAAGAGGATTTGCCTGAAGAGCTGATTTTCCACATAAATTACCTCGGAGCGGATCAACCCACCTTCACTCTCAACTTCTCCAAAGGGTCAAGCCAAATCATCGCTCAGTATTACCAACTAATCCGCTTGGGTTTCGAGGGGTACCAGAACGTGATGCAGAATTGTCACGACAACGCAATGGTGCTGAAGGAAGGGCTGGAAAACACAGGAAGGTTCAGCATAGCGTCGAAGGACATGGGGGTGCCGGTGGTGGCGTTCTCTCTGAAAGACAGAAGCCGGCACGACGAATTCGAGGTGTCGGAAATGCTGCGACGGTTCGGGTGGATCGTGCCGGCATACCCAATGCCAGAGGGGGCGAAACATGTGTCGGTTCTTCGCGTGGTGATCAGAGAAGACTTCTCGCGCACGCTTGCAGAGAGGCTGGTGCTTGATATCGTGAAAGTGTTAGCCGAGCTTGATACTCTGCCACCCAAGAACAGTGGAAAATCGACAAGCTTAGAAGACGGCAAAAAAGAGAAGGCAGAGGAAGCAGGGAGGGAAATAGCGAGTTATTGGAGGAATATAACCAAGGCTAGGAAGATGAAGCTTGCTGAGACTCAAGCTGGTCCTTCAGTAACAGTCATTGCCAAATAA 1509 51.42 MVLSKTFSESDVSVHSTFASRYVRDSAPRFTMPENSMPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMDSVNKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLGDSDTAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKVREGYYVMDPVKAVEMVDENTICVAAILGSTYNGEFEDVKLLNDLLVEKNRKTGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRTKEDLPEELIFHINYLGADQPTFTLNFSKGSSQIIAQYYQLIRLGFEGYQNVMQNCHDNAMVLKEGLENTGRFSIASKDMGVPVVAFSLKDRSRHDEFEVSEMLRRFGWIVPAYPMPEGAKHVSVLRVVIREDFSRTLAERLVLDIVKVLAELDTLPPKNSGKSTSLEDGKKEKAEEAGREIASYWRNITKARKMKLAETQAGPSVTVIAK 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15145154 15147092 + CmaCh04G021590.1 Cma04g02159 293240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02159 502 Gene3D - 1 65 - -
Cma04g02159 502 Pfam Pyridoxal-dependent decarboxylase conserved domain 33 381 IPR002129 GO:0016830|GO:0019752|GO:0030170
Cma04g02159 502 CDD DOPA_deC_like 59 439 - -
Cma04g02159 502 Gene3D - 361 448 - -
Cma04g02159 502 SUPERFAMILY PLP-dependent transferases 15 444 IPR015424 -
Cma04g02159 502 MobiDBLite consensus disorder prediction 449 470 - -
Cma04g02159 502 MobiDBLite consensus disorder prediction 456 470 - -
Cma04g02159 502 TIGRFAM Glu-decarb-GAD: glutamate decarboxylase 16 444 IPR010107 GO:0004351|GO:0006536|GO:0030170
Cma04g02159 502 Gene3D - 66 360 IPR015421 GO:0003824
Cma04g02159 502 PANTHER GLUTAMATE DECARBOXYLASE 1 486 - -
Cma04g02159 502 PANTHER GLUTAMATE DECARBOXYLASE 1 486 IPR010107 GO:0004351|GO:0006536|GO:0030170
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g02159 Cma15g00873 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02159 Cma-Chr4:15145154 Cma04g02275 Cma-Chr4:15881579 0 dispersed
Cma04g02158 Cma-Chr4:15139593 Cma04g02159 Cma-Chr4:15145154 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02159 K01580 - csv:101208026 954.125