Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02171 ATGGCAGCAGAATCCAACACGGGGTTTCACCGTGACGAAACGTTGCGTTCCGCTTTGAATCGGCACGCCATATCTTTTCAATCTACAGCAACAACCAGCAGCTCGGAGATGATGACAATGGGGAATTATTTTGGGGTTAACAACACGCCCGCCATAATGTTTTCGGGGAATTCGAGTGTCGTCAACAACAACAACAACCACAACCACAACCATCCTGTTATCAGCCAAGCTGCCAATTCATCTGGTTCTCTGCTTCTTGATACTGTTCCAGGTCTCAAGCATGATGCTGGGTTAGCGGTTGAATGGTCTGTGGAAGAACAATTCAAATTGGAGGAAGGTCTTGTCAGGTTTGCTGATGAACCAAGCATTTTGAGGTATATCAAGATCGCTGCCATGATACGCGATAAAACCGTCCGGGATGTTGCTTTAAGGTGTAGGTGGATGACTAGAAAACGAAGGAAGCCTGAAGAACATATTGGAAAGAAAGTGAACAATCGAAAGGATAAGCTGGTGGAGTCATCTTTAAAAATAAACACACCTTCAGCCCCTGGACCCAGCATGGCTGCATATTCTCATATGATGCATAATATAAACAGAAACATAAATTCGCCTTCTGAAGTCTCAGAGATAAGCAGTGCAGCTGCACATCTTCTGGAACAGAATGCTCAAGCTTTTAGTCAAATTACTGCCAACCTTTCCATGTACAAGTTGCAGGATAACATAGACCTGTTCTGTCGGACAAGGAATAACATTATTGCTATCTTAAATGACATGAGAGAAACTCCAGGCATACTGAGCAAAATGCTACCACTTCCTGTATCTATAAATGAAGATCTTGCAAATAGAATTTTACCTAGCACAACCTGTCAAAGTTTTAATGTAAGCTACAAGAACAGAGGAAAATTGGATCTTTGGCCCTTGGTTGTGTTTTATGCCAGCACCAGGGCCATTGCAAGGAAATATGAACACGGAGAGGAAGACGATGACGATGACGACGATGTAGAGGTGATTGGTCGAGGTAACAGCTATCCCGCTGCTGCCCAATCAAACGGAATCCAGTTGATGGCTGAGAAAAGAGTGTTTGATATTGATGTATGTCATGTCTGTGAGCTCCTTCAACACAGAGTATTAACAGTGGAAGTAAGTGTCAGATGCAGATATATTGGTCGGGAGATTTGA 1179 43.26 MAAESNTGFHRDETLRSALNRHAISFQSTATTSSSEMMTMGNYFGVNNTPAIMFSGNSSVVNNNNNHNHNHPVISQAANSSGSLLLDTVPGLKHDAGLAVEWSVEEQFKLEEGLVRFADEPSILRYIKIAAMIRDKTVRDVALRCRWMTRKRRKPEEHIGKKVNNRKDKLVESSLKINTPSAPGPSMAAYSHMMHNINRNINSPSEVSEISSAAAHLLEQNAQAFSQITANLSMYKLQDNIDLFCRTRNNIIAILNDMRETPGILSKMLPLPVSINEDLANRILPSTTCQSFNVSYKNRGKLDLWPLVVFYASTRAIARKYEHGEEDDDDDDDVEVIGRGNSYPAAAQSNGIQLMAEKRVFDIDVCHVCELLQHRVLTVEVSVRCRYIGREI 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15189388 15193993 - CmaCh04G021710.1 Cma04g02171 293252

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02171 392 PANTHER TRANSCRIPTION FACTOR SUPERFAMILY PROTEIN, PUTATIVE-RELATED 1 290 - -
Cma04g02171 392 PANTHER FINGER CCCH DOMAIN PROTEIN, PUTATIVE (DUF3755)-RELATED 1 290 - -
Cma04g02171 392 Pfam Protein of unknown function (DUF3755) 234 266 IPR022228 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02171 - - - csv:101213463 494.582
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02171 Cma-Chr4:15189388 Cma06g01706 Cma-Chr6:10480660 3.19E-43 dispersed
Cma15g00862 Cma-Chr15:4351455 Cma04g02171 Cma-Chr4:15189388 7.36E-170 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1067 . . Bda01g01783 . . . . . . . . . . . . . Cpe01g01881 . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe02g01960 . Bma06g00591 . Cmo04g02270 . Cma04g02171 . Car04g02100 . . . Bhi12g01016 . . . . . . Cla01g00691 . . . . . Cre09g1825 Lsi09g00749 Csa05g01326 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002750 1 4 1 1 1 0 2 0 0 1 1 0 2 1 1 2 0 2 2 1 1 0 1 1 1 1 1 20 7 1 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g02171 Cma_Chr04 FPKM 14.11054 14.55522 17.21945 18.258152 19.23139 17.833088 19.824533 13.456215 13.829424 13.506598