Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma04g02184 | ATGAATGGGAAGGATGAATTTGAAGATGAGTGTAGGACTAGTGATCCTATGAGTATCTCCTCTAGTTGGCAATTTGCTAATGAGTCGATCGGATTTGTTTCGACTGGGAATCCCTCGGTTGTTAACAATGGAGATCTAGTTGTTTCTTCTTGTCCTTCAACTTCAATGTCGAACTTGTTTACTCCAACCGTGTTGAATGATCATACGAACTCGCAAAGCTCAAGGTTCTGCAGCGGTTTTAATGAACCAAACAGCATAGATGATTCTAATGTGACTGTTGTTGATGGGGAAGGTCTAAGTTCTTTGAGATCTAGTAGTGATAGAATTCTGGGTATGGATTGGAACCAACAAAGTTCATGGATGAAAGGAGTTTTCTCAGCAAATGTTCCTGGAATGTTTCCAGCTAATTTGTCTCAGCTACCAGCTGATTCGGCGTTCATAGAGCGTGCTGCACGGTTCTCTTGCTTCAATGGTGGCGTTTTCGGGGCTCCACCTTCTGGTCCATTTGGTATTTCAGGCTCTATTGGCATTCATTCTAGGGGTGCCTTTGGAAGTCAAGAACTAAACAAGGTTGTGTTGGAGGCTAAAGAAAAGAGTCCACCAAAGACCGAGAAAGAAAGCGAGATGTCTCGAGACAGGGCTAAACAAGGTTGTGTTGGTGAGTCTGGTAATGAATCTGATGAAACTGGGTTCAGTGGCGGTCAAGATGAGCAATGCACGTTGGGAGGTACCATTGCCGAACCATCTCGGGAAGGATTGTGCTTCAAGAAACGGAAAAGGGGCGACCGGAATATGGAACTTGCTCAAGTTAAAGAAGCTCCAAAACAAATTAACGAAACTGCAAAGAACGGGGCATTAACTCGGCAGAACGGAGACAAAGACCAAAATCCAAGTTTTACTACTAACAAGCCTGCTGGGAAGCAAGGAAAACAAGATTCTCAACCGTCGGATGTGCCCAAAGAAGAATATATTCACGTTAGAGCTCGAAGAGGCCAGGCGACGAACAGCCATAGTCTTGCCGAAAGGGTAAGAAGAGAAAAGATAAGTGAAAGAATGCGGCTCCTTCAAGACCTCGTGCCCGGGTGCAGTAAGGTCACTGGCAAAGCTGTAATGCTCGATGAGATCATTAACTATGTTCAATCGCTGCAACGACAAGTCGAGTTTTTGTCAATGAAACTTGCAACAGTTAATCCCAAGCTGGATTTTAACATCGAAGAGCTCCTTACAAAAGAAATCATGCAATCAAAGGCTGGTCCATCCTTATTTGGTTTCCCTCCTGATCTGCCTATGCCTTACCTCCCGCAACATCCGACTCACCATGGAGTTATTCCACCTTGTATCCCTAACATGGGGAGCTCTCCCGACCTGCTACGAAGAACGATTAATTCCCAGTTGGCATCACTTGGTGGTGGATTCAAGGAGCCTGTTCAGCTACCGAATGTATGGGAGAACGAGCTCCACAATGTCGTTCCAAGGAACTTTGACGTTGCTGCACCCCCCAGTGGCCAAGATGTCGATGGCTCTACTCCACCATGCAACAACACCAGAGCAGAACTCTAA | 1560 | 45.64 | MNGKDEFEDECRTSDPMSISSSWQFANESIGFVSTGNPSVVNNGDLVVSSCPSTSMSNLFTPTVLNDHTNSQSSRFCSGFNEPNSIDDSNVTVVDGEGLSSLRSSSDRILGMDWNQQSSWMKGVFSANVPGMFPANLSQLPADSAFIERAARFSCFNGGVFGAPPSGPFGISGSIGIHSRGAFGSQELNKVVLEAKEKSPPKTEKESEMSRDRAKQGCVGESGNESDETGFSGGQDEQCTLGGTIAEPSREGLCFKKRKRGDRNMELAQVKEAPKQINETAKNGALTRQNGDKDQNPSFTTNKPAGKQGKQDSQPSDVPKEEYIHVRARRGQATNSHSLAERVRREKISERMRLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPKLDFNIEELLTKEIMQSKAGPSLFGFPPDLPMPYLPQHPTHHGVIPPCIPNMGSSPDLLRRTINSQLASLGGGFKEPVQLPNVWENELHNVVPRNFDVAAPPSGQDVDGSTPPCNNTRAEL | 519 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 15257436 | 15261148 | - | CmaCh04G021840.1 | Cma04g02184 | 293265 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma04g02184 | 519 | MobiDBLite | consensus disorder prediction | 265 | 318 | - | - | |
Cma04g02184 | 519 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 187 | 513 | IPR024097 | GO:0006355 | |
Cma04g02184 | 519 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 38 | 163 | IPR024097 | GO:0006355 | |
Cma04g02184 | 519 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 332 | 382 | IPR011598 | GO:0046983 | |
Cma04g02184 | 519 | MobiDBLite | consensus disorder prediction | 194 | 215 | - | - | |
Cma04g02184 | 519 | MobiDBLite | consensus disorder prediction | 496 | 519 | - | - | |
Cma04g02184 | 519 | Gene3D | - | 329 | 403 | IPR036638 | GO:0046983 | |
Cma04g02184 | 519 | MobiDBLite | consensus disorder prediction | 194 | 244 | - | - | |
Cma04g02184 | 519 | SMART | finulus | 338 | 388 | IPR011598 | GO:0046983 | |
Cma04g02184 | 519 | Pfam | Helix-loop-helix DNA-binding domain | 335 | 383 | IPR011598 | GO:0046983 | |
Cma04g02184 | 519 | MobiDBLite | consensus disorder prediction | 280 | 313 | - | - | |
Cma04g02184 | 519 | PANTHER | TRANSCRIPTION FACTOR BHLH49 | 38 | 163 | - | - | |
Cma04g02184 | 519 | PANTHER | TRANSCRIPTION FACTOR BHLH49 | 187 | 513 | - | - | |
Cma04g02184 | 519 | CDD | bHLH_AtBPE_like | 322 | 407 | - | - | |
Cma04g02184 | 519 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 330 | 401 | IPR036638 | GO:0046983 | |
Cma04g02184 | 519 | MobiDBLite | consensus disorder prediction | 222 | 239 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma04g01570 | Cma-Chr4:7972133 | Cma04g02184 | Cma-Chr4:15257436 | 2.49E-111 | dispersed | |
Cma04g02184 | Cma-Chr4:15257436 | Cma18g01076 | Cma-Chr18:8899573 | 1.43E-121 | dispersed | |
Cma17g01290 | Cma-Chr17:8705244 | Cma04g02184 | Cma-Chr4:15257436 | 4.33E-50 | dispersed | |
Cma15g00847 | Cma-Chr15:4285394 | Cma04g02184 | Cma-Chr4:15257436 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34933 | PF00010 | HLH | 6.30E-06 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma04g02184 | - | - | csv:101216110 | 812.757 |