Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02184 ATGAATGGGAAGGATGAATTTGAAGATGAGTGTAGGACTAGTGATCCTATGAGTATCTCCTCTAGTTGGCAATTTGCTAATGAGTCGATCGGATTTGTTTCGACTGGGAATCCCTCGGTTGTTAACAATGGAGATCTAGTTGTTTCTTCTTGTCCTTCAACTTCAATGTCGAACTTGTTTACTCCAACCGTGTTGAATGATCATACGAACTCGCAAAGCTCAAGGTTCTGCAGCGGTTTTAATGAACCAAACAGCATAGATGATTCTAATGTGACTGTTGTTGATGGGGAAGGTCTAAGTTCTTTGAGATCTAGTAGTGATAGAATTCTGGGTATGGATTGGAACCAACAAAGTTCATGGATGAAAGGAGTTTTCTCAGCAAATGTTCCTGGAATGTTTCCAGCTAATTTGTCTCAGCTACCAGCTGATTCGGCGTTCATAGAGCGTGCTGCACGGTTCTCTTGCTTCAATGGTGGCGTTTTCGGGGCTCCACCTTCTGGTCCATTTGGTATTTCAGGCTCTATTGGCATTCATTCTAGGGGTGCCTTTGGAAGTCAAGAACTAAACAAGGTTGTGTTGGAGGCTAAAGAAAAGAGTCCACCAAAGACCGAGAAAGAAAGCGAGATGTCTCGAGACAGGGCTAAACAAGGTTGTGTTGGTGAGTCTGGTAATGAATCTGATGAAACTGGGTTCAGTGGCGGTCAAGATGAGCAATGCACGTTGGGAGGTACCATTGCCGAACCATCTCGGGAAGGATTGTGCTTCAAGAAACGGAAAAGGGGCGACCGGAATATGGAACTTGCTCAAGTTAAAGAAGCTCCAAAACAAATTAACGAAACTGCAAAGAACGGGGCATTAACTCGGCAGAACGGAGACAAAGACCAAAATCCAAGTTTTACTACTAACAAGCCTGCTGGGAAGCAAGGAAAACAAGATTCTCAACCGTCGGATGTGCCCAAAGAAGAATATATTCACGTTAGAGCTCGAAGAGGCCAGGCGACGAACAGCCATAGTCTTGCCGAAAGGGTAAGAAGAGAAAAGATAAGTGAAAGAATGCGGCTCCTTCAAGACCTCGTGCCCGGGTGCAGTAAGGTCACTGGCAAAGCTGTAATGCTCGATGAGATCATTAACTATGTTCAATCGCTGCAACGACAAGTCGAGTTTTTGTCAATGAAACTTGCAACAGTTAATCCCAAGCTGGATTTTAACATCGAAGAGCTCCTTACAAAAGAAATCATGCAATCAAAGGCTGGTCCATCCTTATTTGGTTTCCCTCCTGATCTGCCTATGCCTTACCTCCCGCAACATCCGACTCACCATGGAGTTATTCCACCTTGTATCCCTAACATGGGGAGCTCTCCCGACCTGCTACGAAGAACGATTAATTCCCAGTTGGCATCACTTGGTGGTGGATTCAAGGAGCCTGTTCAGCTACCGAATGTATGGGAGAACGAGCTCCACAATGTCGTTCCAAGGAACTTTGACGTTGCTGCACCCCCCAGTGGCCAAGATGTCGATGGCTCTACTCCACCATGCAACAACACCAGAGCAGAACTCTAA 1560 45.64 MNGKDEFEDECRTSDPMSISSSWQFANESIGFVSTGNPSVVNNGDLVVSSCPSTSMSNLFTPTVLNDHTNSQSSRFCSGFNEPNSIDDSNVTVVDGEGLSSLRSSSDRILGMDWNQQSSWMKGVFSANVPGMFPANLSQLPADSAFIERAARFSCFNGGVFGAPPSGPFGISGSIGIHSRGAFGSQELNKVVLEAKEKSPPKTEKESEMSRDRAKQGCVGESGNESDETGFSGGQDEQCTLGGTIAEPSREGLCFKKRKRGDRNMELAQVKEAPKQINETAKNGALTRQNGDKDQNPSFTTNKPAGKQGKQDSQPSDVPKEEYIHVRARRGQATNSHSLAERVRREKISERMRLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPKLDFNIEELLTKEIMQSKAGPSLFGFPPDLPMPYLPQHPTHHGVIPPCIPNMGSSPDLLRRTINSQLASLGGGFKEPVQLPNVWENELHNVVPRNFDVAAPPSGQDVDGSTPPCNNTRAEL 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15257436 15261148 - CmaCh04G021840.1 Cma04g02184 293265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02184 519 MobiDBLite consensus disorder prediction 265 318 - -
Cma04g02184 519 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 187 513 IPR024097 GO:0006355
Cma04g02184 519 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 38 163 IPR024097 GO:0006355
Cma04g02184 519 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 332 382 IPR011598 GO:0046983
Cma04g02184 519 MobiDBLite consensus disorder prediction 194 215 - -
Cma04g02184 519 MobiDBLite consensus disorder prediction 496 519 - -
Cma04g02184 519 Gene3D - 329 403 IPR036638 GO:0046983
Cma04g02184 519 MobiDBLite consensus disorder prediction 194 244 - -
Cma04g02184 519 SMART finulus 338 388 IPR011598 GO:0046983
Cma04g02184 519 Pfam Helix-loop-helix DNA-binding domain 335 383 IPR011598 GO:0046983
Cma04g02184 519 MobiDBLite consensus disorder prediction 280 313 - -
Cma04g02184 519 PANTHER TRANSCRIPTION FACTOR BHLH49 38 163 - -
Cma04g02184 519 PANTHER TRANSCRIPTION FACTOR BHLH49 187 513 - -
Cma04g02184 519 CDD bHLH_AtBPE_like 322 407 - -
Cma04g02184 519 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 330 401 IPR036638 GO:0046983
Cma04g02184 519 MobiDBLite consensus disorder prediction 222 239 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01570 Cma-Chr4:7972133 Cma04g02184 Cma-Chr4:15257436 2.49E-111 dispersed
Cma04g02184 Cma-Chr4:15257436 Cma18g01076 Cma-Chr18:8899573 1.43E-121 dispersed
Cma17g01290 Cma-Chr17:8705244 Cma04g02184 Cma-Chr4:15257436 4.33E-50 dispersed
Cma15g00847 Cma-Chr15:4285394 Cma04g02184 Cma-Chr4:15257436 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34933 PF00010 HLH 6.30E-06 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02184 - - csv:101216110 812.757