Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02193 ATGTTGAGTTCAGCAAGCAGCTCAGCAATAAAAGCTGCTCCTTTTTTCTTCTTGTCATTTGATGAACCTACAGCAGCAAGTTTAATGGAAATTAGGAGAAAAAGTGGGTTACTGTCTTTCTTGGCTTTGGTTTGGTTATGGGCTTCTGCAACTGCAACTTCAACGGGCATTCGTTTAAACGTTGAAGTTCAAGCTTTGATGGGAATCAAAGCTGGTTTGAAGGATCCTCATTCTGTTCTAGCTTGGGATGAAAATGCTGTGGATCCATGCACTTGGAATTTAATCACTTGCTCTCCTGATAAACTTGTGATTGGCATAGGAGCTCCAAGCCAAAACTTTTCTGGGACACTCTCACCAAGTATTGGAAATTTGACAAACCTTCAATTTTTGCTTCTTCAGAATAACTATATATCAGGAAAAGTTCCTAACGAGATTAGCAAGATACCGAAACTTCACACACTTGATCTTTCAAACAACTTGTTTTCTGGCGAAGTTCCTAGCTCTTTCTCCAATTTGAAGAGCCTCCAATACCTGAGACTCAACAATAACACCTTCTCTGGGACAATCCCATCATCACTGGCTAACATGAACCAGCTTGCCTTGCTGGATCTGTCCTATAATAATTTGAGCGGTCCTCTGCCCAGATTGTTGGCTAAGACATATAACTTTACTGGAAATTCTTTGATTTGTGCGCCTGGCTCTAAGGAAGTATGCTACGGAACAACTCCATTGCCACTTTCTTTCGCTGTCGCTAATTCCACATACTCCCAACCTCCTAGGAGACATAAAGGCCAGAGAATTGCTCTAGTCATTGGCCTCAGCTTGGCCTGCATCTGTCTGTTAACTCTTACATATGGTTTCTTTATCTGGCGGAAGCATAAGCACAACCAGCAAATATTCTTTGAAACTAATGATCGGCATCATGAAGAACTTAGCCTTGGAAACATAAAGAGGTTTCAGTTCAGAGAACTTCGGAATGCCACTCACAATTTCAGCAGTAAAAACTTGATTGGAAAAGGTGGGTTTGGAAATGTTTACAGAGGATATCTACAAGATGGCACCATTATAGCTGTCAAGAGACTCAAAGATGGGAATGCTATGAGAGGAGAGACCCAATTTCAGACTGAAGTGGAGATGATAAGCTTGGCAGTGCATAGGAACCTCCTCAAGCTGTATGGTTTCTGTATGACAGAAACTGAGAGACTTTTGGTCTATCCATATATGTCTAATGGCAGTGTTGCTACCCGTCTTAAAGCGAAACCAGCTCTGGATTGGGGTACAAGGAAGAGAATTGCCTTGGGAGCTGCAAGGGGCTTGTTATACTTACATGAGCAGTGTGATCCAAAAATAATTCACAGAGATGTGAAAGCTGCAAATATACTGCTTGATGATTTCTGCGAGGCAGTAGTCGGTGATTTTGGGCTCGCAAAGCTACTAGATCACAGTGATTCACATGTCACTACTGCTGTGAGAGGAACTGTTGGGCACATTGCACCAGAGTATCTGTCAACCGGCCAATCCTCAGAGAAAACTGATGTTTTCGGGTTTGGAATTCTATTACTTGAGCTTGTATCAGGTCAAAGAGCTCTTGAATTTGGAAAAGCAGCAAACCAAAAGGGTGCAATACTAGACTGGATAAAGAAGCTACACCAAGAAAAGAAGTTAGAAATGCTTGTTGACAAAGACTTGAGAAGCAATTATGACCCAATTGAAATTGAAGAAATTGTTCGAGTAGCTCTCTTGTGCATCCAATATCTTCCAAGCAACAGGCCAAAGATGTCTGAAGTGGTCAGGATGCTTGAAGGAGATGGGCTTGCAGAGAAATGGGAAGCTTCCCGACGAGCAGAAGCAAGCAGGGTGAGAGCCAATGAGTTCTCCTCTTCAGAACGTTACTCTGATCTTACTGACGACGCTTCATTGTTTGCTCAAGCAATAGAGCTCTCAGGACCAAGATAA 1956 42.38 MLSSASSSAIKAAPFFFLSFDEPTAASLMEIRRKSGLLSFLALVWLWASATATSTGIRLNVEVQALMGIKAGLKDPHSVLAWDENAVDPCTWNLITCSPDKLVIGIGAPSQNFSGTLSPSIGNLTNLQFLLLQNNYISGKVPNEISKIPKLHTLDLSNNLFSGEVPSSFSNLKSLQYLRLNNNTFSGTIPSSLANMNQLALLDLSYNNLSGPLPRLLAKTYNFTGNSLICAPGSKEVCYGTTPLPLSFAVANSTYSQPPRRHKGQRIALVIGLSLACICLLTLTYGFFIWRKHKHNQQIFFETNDRHHEELSLGNIKRFQFRELRNATHNFSSKNLIGKGGFGNVYRGYLQDGTIIAVKRLKDGNAMRGETQFQTEVEMISLAVHRNLLKLYGFCMTETERLLVYPYMSNGSVATRLKAKPALDWGTRKRIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDFCEAVVGDFGLAKLLDHSDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELVSGQRALEFGKAANQKGAILDWIKKLHQEKKLEMLVDKDLRSNYDPIEIEEIVRVALLCIQYLPSNRPKMSEVVRMLEGDGLAEKWEASRRAEASRVRANEFSSSERYSDLTDDASLFAQAIELSGPR 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15292397 15296452 - CmaCh04G021930.1 Cma04g02193 293274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02193 651 PANTHER PROTEIN NSP-INTERACTING KINASE 2-LIKE 36 651 - -
Cma04g02193 651 Pfam Leucine rich repeat N-terminal domain 60 98 IPR013210 -
Cma04g02193 651 SUPERFAMILY L domain-like 62 228 - -
Cma04g02193 651 Gene3D Transferase(Phosphotransferase) domain 1 408 620 - -
Cma04g02193 651 SUPERFAMILY Protein kinase-like (PK-like) 309 601 IPR011009 -
Cma04g02193 651 Gene3D Ribonuclease Inhibitor 59 240 IPR032675 -
Cma04g02193 651 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 36 651 - -
Cma04g02193 651 ProSitePatterns Serine/Threonine protein kinases active-site signature. 450 462 IPR008271 GO:0004672|GO:0006468
Cma04g02193 651 Gene3D Phosphorylase Kinase; domain 1 300 407 - -
Cma04g02193 651 Pfam Leucine rich repeat 149 209 IPR001611 GO:0005515
Cma04g02193 651 SMART serkin_6 331 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g02193 651 ProSitePatterns Protein kinases ATP-binding region signature. 337 359 IPR017441 GO:0005524
Cma04g02193 651 ProSiteProfiles Protein kinase domain profile. 331 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g02193 651 Pfam Protein kinase domain 332 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01560 Cma-Chr4:7925882 Cma04g02193 Cma-Chr4:15292397 0 dispersed
Cma04g02193 Cma-Chr4:15292397 Cma04g02831 Cma-Chr4:18924345 0 dispersed
Cma04g02193 Cma-Chr4:15292397 Cma18g01070 Cma-Chr18:8860581 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68527 PF00069 Pkinase 1.50E-44 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02193 - - csv:101222667 1084.32