Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02197 ATGGGTGTTGCTGTGGCTGTTGATGTTGAAACCACTCGGTTTCATGTTCTTGCTGTTGATGATAGCTTCATCGATCGGAAATTGATCGAGCGCCTCCTCAAAACCTCCTCCTATCACGTCACCGCTGTTGATTCCGGTACCAAGGCCTTGGAATTTCTCGGTCTTGTTGAAGATCCTGATCTCGATGATGATGTTGATGATGAACAACACTCCAAACTCCCCCCCTCAATTCAAGAAGTGGATGTGAATTTGATCATCACGGATTACAGTATGCCTGGAATGAGTGGCTACGATCTCCTCAGGAAGATCAAGGAATCGAAATCTCTTAAAGACATACCAGTTGTGATCATGTCCTCTGAGAATGTTCCTTCAAGAATCAACAGATGCTTGGAAGAAGGAGCGGAAGAGTTCTTCCTCAAACCAGTTCAATTGTCCGATGTGAGGAAACTGAGACCTCATTTGATTAAAGAAAAATCCACAAGGAATTGA 489 43.97 MGVAVAVDVETTRFHVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLVEDPDLDDDVDDEQHSKLPPSIQEVDVNLIITDYSMPGMSGYDLLRKIKESKSLKDIPVVIMSSENVPSRINRCLEEGAEEFFLKPVQLSDVRKLRPHLIKEKSTRN 162
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15337097 15338436 + CmaCh04G021970.1 Cma04g02197 293278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02197 162 PANTHER RESPONSE REGULATOR ARR8, PUTATIVE-RELATED 8 160 - -
Cma04g02197 162 ProSiteProfiles Response regulatory domain profile. 15 155 IPR001789 GO:0000160
Cma04g02197 162 SUPERFAMILY CheY-like 13 151 IPR011006 -
Cma04g02197 162 Pfam Response regulator receiver domain 77 149 IPR001789 GO:0000160
Cma04g02197 162 Gene3D - 15 161 - -
Cma04g02197 162 PANTHER TWO-COMPONENT RESPONSE REGULATOR 8 160 IPR045279 GO:0009736
Cma04g02197 162 CDD REC_typeA_ARR 16 150 - -
Cma04g02197 162 SMART REC_2 14 151 IPR001789 GO:0000160
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02197 Cma-Chr4:15337097 Cma14g00515 Cma-Chr14:2564303 3.84E-69 dispersed
Cma15g00834 Cma-Chr15:4217333 Cma04g02197 Cma-Chr4:15337097 1.58E-86 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34935 PF00072 Response_reg 5.00E-16 CL0304 Cma TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02197 K14492 - csv:101210839 241.891