Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02210 ATGGGGTCGAATCTAGTGCCCGAAAATCCATTGCAGTCCAGTTTGCAGTTTCAGCCCAAAATAGGAGAAGAGAAAGCTGAAGAACTTCGCAGCTTCGACTTTCCAGTTCCAAAACGAAGCCCGAATTCCATTACTGCAGCTTTCACCAGAGCTTCCTTTCAATCTCTTTCTCTCTATAATCGGCGAAAATCCTCTTCTTTTTCGTTTTCGTTCTTCCATATTCGCTGTAAGATTATGCCAGACGTGCAAGCTCTTGTGAATGATTTCGTTATCAAGCTTAAGAAGCGTAAAATTGAGGGCTCTTTGGCCACCGCGAAGCATACAGCTGAATTGCTTCGTTCTGTCATTTCCCAGCAGCGAATACCCTACACGAATCAGGCGGCTGCTTTGATTGATGCTGTGAAAGCTGTTGGAGAGCAGCTGATTGCTGCGAATCCTGTTGAGCTTGCTGTGGGTAATATTGTGAGGCGTGTTTTGCACATTATTAGGGAGGAGGATCTCTCTCTCACCACAGCTTCAATTGCTGGGTTGAATTTAGCAGCAGTTAGTGATGATGAAGATGACAATGAAAAAGATGATCGCCCGGTCCTCTCAGCTGCTGCTGTTGCAGCTGCTGCAAGAAGCACTTTGCGACCGCCTTCCTTGCAAACTCTTCTTGAGGATGTTCCTAACCAAGCATCTGTTCATCAAACTTCTTCATCTGGAGGTGATTCAGAAGGAAAGAGCAAATCTGCTGATAAAAGTTCAAGGAGTCGGAAACTCAAGCATGATGTAATTGAAGCTGTTAATGAACTTATTCAGGATATTGCAACTTGTCATGAACAGATTGCTGAGCAAGCAGTGGAACACATTCATCAAAACGAGGTAATATTAACTCTGGGGAGTTCCAGAACAGTATTGGAATTTCTTTGTGCTGCTAAGGAGAAGAAAAGGTCCTTCCGGGTGTTTGTTGCTGAGGGTGCTCCAAGATATCAGGGTCATCTTCTTGCTAAGGAGTTGGTTACAAGAGGTTTACAGACCACACTTATTACTGATTCTGCAGTTTTTGCCATGATCTCTCGGGTGAATATGGTAATAGTTGGCGCTCATGCTGTCATGGCAAATGGTGGTGTCATAGCACCTGTTGGATTGAATATGTTGGCCCTTGCAGCTAAAAGGCATGCTGTTCCTTTTGTTGTACTAGCTGGAAGTCACAAGTTATGCCCTTTGTATCCTCACAATCCTGAAGTTCTACTTAATGAACTGAGATCCCCATCAGAGCTACTGGACATCGGTGAATTTTCAGATTGTATGGACTTTGGAACTAACACTGGTTCTCCTCTTCTTCACGTAGTTAACCCTACATTTGACTATGTGCCGCCAGCACTCGTTAGTTTATTTATTACTGACACAGGCGGCCATAACTCATCATACATGTATCGGCTTATTTCTGATTATTATTCAGCTGATGATTTGGTAATTAAACGAAGGCTTTCGACAGGGAGCTGA 1488 43.75 MGSNLVPENPLQSSLQFQPKIGEEKAEELRSFDFPVPKRSPNSITAAFTRASFQSLSLYNRRKSSSFSFSFFHIRCKIMPDVQALVNDFVIKLKKRKIEGSLATAKHTAELLRSVISQQRIPYTNQAAALIDAVKAVGEQLIAANPVELAVGNIVRRVLHIIREEDLSLTTASIAGLNLAAVSDDEDDNEKDDRPVLSAAAVAAAARSTLRPPSLQTLLEDVPNQASVHQTSSSGGDSEGKSKSADKSSRSRKLKHDVIEAVNELIQDIATCHEQIAEQAVEHIHQNEVILTLGSSRTVLEFLCAAKEKKRSFRVFVAEGAPRYQGHLLAKELVTRGLQTTLITDSAVFAMISRVNMVIVGAHAVMANGGVIAPVGLNMLALAAKRHAVPFVVLAGSHKLCPLYPHNPEVLLNELRSPSELLDIGEFSDCMDFGTNTGSPLLHVVNPTFDYVPPALVSLFITDTGGHNSSYMYRLISDYYSADDLVIKRRLSTGS 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15425396 15433214 - CmaCh04G022100.1 Cma04g02210 293291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02210 495 PANTHER BNAA01G32370D PROTEIN 68 487 - -
Cma04g02210 495 MobiDBLite consensus disorder prediction 221 254 - -
Cma04g02210 495 MobiDBLite consensus disorder prediction 240 254 - -
Cma04g02210 495 MobiDBLite consensus disorder prediction 221 239 - -
Cma04g02210 495 Gene3D - 272 479 IPR042529 -
Cma04g02210 495 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT BETA 68 487 - -
Cma04g02210 495 Pfam Initiation factor 2 subunit family 97 467 IPR000649 GO:0044237
Cma04g02210 495 SUPERFAMILY NagB/RpiA/CoA transferase-like 78 484 IPR037171 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02210 Cma-Chr4:15425396 Cma08g00830 Cma-Chr8:5028613 6.20E-22 dispersed
Cma04g02210 Cma-Chr4:15425396 Cma15g00822 Cma-Chr15:4132604 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02210 K03754 - csv:101220366 740.339