Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma04g02211 | ATGGAAGAAGAGTATGGATGGGACAAGGTCCACAGTCTTTTCATACTTTACTTTTTGTACTTTCTCGAGAAATTTCGCTCTGTAATCCTCTGGTTCTCTGTCGAACAACGGCTTCATTTTGAAATTCTGTCTTTGAGCTACGAACTTTTCGGTGTTCGTATTTCTCTGATGCGGCAGCATAAAACTGTTTTCTTAAGGATGGCATCTGGAAATCCTTGTTTTGATGATGTGCGGAGCAAACCAGAGGTTATTGATCCTCCACAAAATCAAGATATGATGGACATCAGGGAAGCTGTGGATGGTCCAACTCAAAATGAACTTAAACCTAATGTTGCTGTTTCCAGAAGTGTTCGTCAGCTTTTGGAATGCCCAGTGTGTTTGAATGCAATGTACCCTCCAATACATCAGTGTTCAAATGGTCATACACTGTGTTCGGATTGCAAGCCTAGGGTGCACAATCGGTGCCCTACGTGCAGGCACGAACTTGGCAATATTCGATGCCTTGCATTGGAGAAGGTGGCTGCATCGCTAGAACTTCCATGTAAATATCAGAGCTATGGTTGCATTGGCATATGTCCTTATTACAGCAAGGTCAAACATGAATCCCAATGTATTTACAGACCTTATAGTTGTCCATACGCTGGATCAGAATGTTTGGTCGTTGGTGATATAGCCTATTTGGTGGCCCATCTCAAAGATGATCATAAAGTAGACATGCACAGTGGAAGCACGTTCAACCATCGATACGTAAAATCAAACCCTCAAGAAGTCGAAAACGCAACATGGATGCTAACGGTTTTCAGTTGCTTTGGTCATTACTTTTGCCTGCATTTCGAAGCTTTCCAGCTCGGAATGGCTCCAGCATACATAGCATTCTTGCGGTTCATGGGCGATGATGATGATGCAAAGAACTACAGCTATAGTCTCGAAGTGGGAGGAAATGGGAGGAAGATAGTATGGCAAGGGGTGCCCAGAAGCATCAGGGACAGCCATCGAAAAGTTCGGGATAGTTTCGACGGGCTCATTATCCAATGTAACATGGCTCTCTTCTTCTCCGGTGGAGACCGTAAGGAACTGAAGCTTAGGGTGACTGGTAGAATTTGGAAAGAACAGGATACTGGGAGAACAGCTTATGATGAAACTTTCAGTTCAAATCCTATCCTCTTGTCCAGTAGTCGGTTGCCTTTTTGTAGAGTAAATGAGGCTTTCTAA | 1212 | 43.65 | MEEEYGWDKVHSLFILYFLYFLEKFRSVILWFSVEQRLHFEILSLSYELFGVRISLMRQHKTVFLRMASGNPCFDDVRSKPEVIDPPQNQDMMDIREAVDGPTQNELKPNVAVSRSVRQLLECPVCLNAMYPPIHQCSNGHTLCSDCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQSYGCIGICPYYSKVKHESQCIYRPYSCPYAGSECLVVGDIAYLVAHLKDDHKVDMHSGSTFNHRYVKSNPQEVENATWMLTVFSCFGHYFCLHFEAFQLGMAPAYIAFLRFMGDDDDAKNYSYSLEVGGNGRKIVWQGVPRSIRDSHRKVRDSFDGLIIQCNMALFFSGGDRKELKLRVTGRIWKEQDTGRTAYDETFSSNPILLSSSRLPFCRVNEAF | 403 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 15434987 | 15437992 | + | CmaCh04G022110.1 | Cma04g02211 | 293292 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma04g02211 | 403 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 232 | 364 | IPR008974 | GO:0005515 | |
Cma04g02211 | 403 | ProSiteProfiles | Zinc finger RING-type profile. | 123 | 159 | IPR001841 | - | |
Cma04g02211 | 403 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE DIS1 | 79 | 371 | - | - | |
Cma04g02211 | 403 | CDD | Sina | 237 | 365 | - | - | |
Cma04g02211 | 403 | Pfam | Seven in absentia protein family | 165 | 364 | IPR018121 | GO:0005737|GO:0006511|GO:0007275 | |
Cma04g02211 | 403 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 85 | 175 | IPR013083 | - | |
Cma04g02211 | 403 | ProSiteProfiles | Zinc finger SIAH-type profile. | 176 | 236 | IPR013010 | GO:0008270 | |
Cma04g02211 | 403 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 176 | 231 | IPR013083 | - | |
Cma04g02211 | 403 | SUPERFAMILY | RING/U-box | 116 | 163 | - | - | |
Cma04g02211 | 403 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE SIAH | 79 | 371 | - | - | |
Cma04g02211 | 403 | CDD | RING-HC_SIAHs | 121 | 159 | - | - | |
Cma04g02211 | 403 | SUPERFAMILY | TRAF domain-like | 176 | 368 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma04g02211 | Cma-Chr4:15434987 | Cma18g00866 | Cma-Chr18:7539215 | 0 | dispersed | |
Cma04g02211 | Cma-Chr4:15434987 | Cma15g00822 | Cma-Chr15:4132604 | 0 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma04g02211 | K04506 | - | csv:101220834 | 606.675 |