Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02211 ATGGAAGAAGAGTATGGATGGGACAAGGTCCACAGTCTTTTCATACTTTACTTTTTGTACTTTCTCGAGAAATTTCGCTCTGTAATCCTCTGGTTCTCTGTCGAACAACGGCTTCATTTTGAAATTCTGTCTTTGAGCTACGAACTTTTCGGTGTTCGTATTTCTCTGATGCGGCAGCATAAAACTGTTTTCTTAAGGATGGCATCTGGAAATCCTTGTTTTGATGATGTGCGGAGCAAACCAGAGGTTATTGATCCTCCACAAAATCAAGATATGATGGACATCAGGGAAGCTGTGGATGGTCCAACTCAAAATGAACTTAAACCTAATGTTGCTGTTTCCAGAAGTGTTCGTCAGCTTTTGGAATGCCCAGTGTGTTTGAATGCAATGTACCCTCCAATACATCAGTGTTCAAATGGTCATACACTGTGTTCGGATTGCAAGCCTAGGGTGCACAATCGGTGCCCTACGTGCAGGCACGAACTTGGCAATATTCGATGCCTTGCATTGGAGAAGGTGGCTGCATCGCTAGAACTTCCATGTAAATATCAGAGCTATGGTTGCATTGGCATATGTCCTTATTACAGCAAGGTCAAACATGAATCCCAATGTATTTACAGACCTTATAGTTGTCCATACGCTGGATCAGAATGTTTGGTCGTTGGTGATATAGCCTATTTGGTGGCCCATCTCAAAGATGATCATAAAGTAGACATGCACAGTGGAAGCACGTTCAACCATCGATACGTAAAATCAAACCCTCAAGAAGTCGAAAACGCAACATGGATGCTAACGGTTTTCAGTTGCTTTGGTCATTACTTTTGCCTGCATTTCGAAGCTTTCCAGCTCGGAATGGCTCCAGCATACATAGCATTCTTGCGGTTCATGGGCGATGATGATGATGCAAAGAACTACAGCTATAGTCTCGAAGTGGGAGGAAATGGGAGGAAGATAGTATGGCAAGGGGTGCCCAGAAGCATCAGGGACAGCCATCGAAAAGTTCGGGATAGTTTCGACGGGCTCATTATCCAATGTAACATGGCTCTCTTCTTCTCCGGTGGAGACCGTAAGGAACTGAAGCTTAGGGTGACTGGTAGAATTTGGAAAGAACAGGATACTGGGAGAACAGCTTATGATGAAACTTTCAGTTCAAATCCTATCCTCTTGTCCAGTAGTCGGTTGCCTTTTTGTAGAGTAAATGAGGCTTTCTAA 1212 43.65 MEEEYGWDKVHSLFILYFLYFLEKFRSVILWFSVEQRLHFEILSLSYELFGVRISLMRQHKTVFLRMASGNPCFDDVRSKPEVIDPPQNQDMMDIREAVDGPTQNELKPNVAVSRSVRQLLECPVCLNAMYPPIHQCSNGHTLCSDCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQSYGCIGICPYYSKVKHESQCIYRPYSCPYAGSECLVVGDIAYLVAHLKDDHKVDMHSGSTFNHRYVKSNPQEVENATWMLTVFSCFGHYFCLHFEAFQLGMAPAYIAFLRFMGDDDDAKNYSYSLEVGGNGRKIVWQGVPRSIRDSHRKVRDSFDGLIIQCNMALFFSGGDRKELKLRVTGRIWKEQDTGRTAYDETFSSNPILLSSSRLPFCRVNEAF 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15434987 15437992 + CmaCh04G022110.1 Cma04g02211 293292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02211 403 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 232 364 IPR008974 GO:0005515
Cma04g02211 403 ProSiteProfiles Zinc finger RING-type profile. 123 159 IPR001841 -
Cma04g02211 403 PANTHER E3 UBIQUITIN-PROTEIN LIGASE DIS1 79 371 - -
Cma04g02211 403 CDD Sina 237 365 - -
Cma04g02211 403 Pfam Seven in absentia protein family 165 364 IPR018121 GO:0005737|GO:0006511|GO:0007275
Cma04g02211 403 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 175 IPR013083 -
Cma04g02211 403 ProSiteProfiles Zinc finger SIAH-type profile. 176 236 IPR013010 GO:0008270
Cma04g02211 403 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 176 231 IPR013083 -
Cma04g02211 403 SUPERFAMILY RING/U-box 116 163 - -
Cma04g02211 403 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 79 371 - -
Cma04g02211 403 CDD RING-HC_SIAHs 121 159 - -
Cma04g02211 403 SUPERFAMILY TRAF domain-like 176 368 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02211 Cma-Chr4:15434987 Cma18g00866 Cma-Chr18:7539215 0 dispersed
Cma04g02211 Cma-Chr4:15434987 Cma15g00822 Cma-Chr15:4132604 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02211 K04506 - csv:101220834 606.675