Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02214 ATGTCAACCCAGCCGAAGAACTCCGATTCAGGCGTTTGTCTCTTCGATCTTCTATTTCCAGATTCAGAAATGCGAGGCTGGGACTGGAGTCGAATGCCCTCTGATTCAGAAACGCAACGGTGGAACTGGAAAAAGGATCAACAGCTCTCTGGCCCCCAGAAAAGGTTGGAAGATCTGTTGCGCCAATCTGGTAATAAGTTATGTGCAGATTGTGGCTCACCAGATCCGAAATGGGTATCGTTAAATTTGGGAGTATTTATCTGTATAAAGTGTTCTGGAGTACACAGAAGTCTTGGAGTTCATATCTCTAAGGTTTTCTCAGTGAAGCTTGATAATTGGACGGATGAACAAGTCAATACTTTTATAAGCATGGGTGGAAACGCAGATGTAAACAAGAAATATGAAGCCGGCATCATAGATTTGACCAGAAAACCAAAACCAGATTCCTGTATAGAGGAGCGCTTTGAGTTTATAAGGAGAAAGTATGAACTGCTACAATTTTATAACGGCAATGGTCATAATTCTAGTGATGGCTCAGTTAATAAAAGGATTTCATCATGCTCTCAAATTAACTCTTCAAGCAAGAATGGTTCCCAGGACAAAAGGCAGTATGAGAAACTAGCTACCAGGCATCGCATTGCGAATGCGTTTCGTAACAGCCGAGTTAGAAGAGATAGTGACCACAAGAGTTTCGACAAGAGCAACCCTTCCGTCTCAAGACTAGCGTCAGCAGGTATGGTCGAGTTCGTCGGGTTGGTTAAGGTCAATGTGGTTAGAGGCACGAACCTAGCTATCAGAGACGTGGTGTCCAGTGATCCCTATGTAATTCTCTCATTGGGTCACCAATCTGTGAGGACTCGTGTCATAAAGAGCAACCTTAACCCAGTTTGGAATGAGAGCCTAATGTTGTCGATTCCCGAACATATACCTCCGCTAAAAGTGCTTGTCTATGATAAGGACACATTTTCCACTGATGACTTTATGGGCGAGGCCGAAATCGACATACAACCCTTGGTTGCAGCCACAAGGGCATACGAGAAGTCGACAATTGATGAATCAATGCAGCTGGGAAAATGGGTGGCAACTAATGACAATACGTTGGTAAAAGATGGAATCATTAACCTTGTAGATGGAAAGGTTAGACAGGACATATCTCTTAGATTGCAGAATGTGGAGAGAGGTGTTCTTGAGGTTGAGCTAGAATGCATTCCACTCACACAATAG 1224 43.46 MSTQPKNSDSGVCLFDLLFPDSEMRGWDWSRMPSDSETQRWNWKKDQQLSGPQKRLEDLLRQSGNKLCADCGSPDPKWVSLNLGVFICIKCSGVHRSLGVHISKVFSVKLDNWTDEQVNTFISMGGNADVNKKYEAGIIDLTRKPKPDSCIEERFEFIRRKYELLQFYNGNGHNSSDGSVNKRISSCSQINSSSKNGSQDKRQYEKLATRHRIANAFRNSRVRRDSDHKSFDKSNPSVSRLASAGMVEFVGLVKVNVVRGTNLAIRDVVSSDPYVILSLGHQSVRTRVIKSNLNPVWNESLMLSIPEHIPPLKVLVYDKDTFSTDDFMGEAEIDIQPLVAATRAYEKSTIDESMQLGKWVATNDNTLVKDGIINLVDGKVRQDISLRLQNVERGVLEVELECIPLTQ 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15444552 15453981 + CmaCh04G022140.1 Cma04g02214 293295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02214 407 CDD C2_ArfGAP 250 394 - -
Cma04g02214 407 PRINTS HIV Rev interacting protein signature 65 84 IPR001164 GO:0005096
Cma04g02214 407 PRINTS HIV Rev interacting protein signature 84 101 IPR001164 GO:0005096
Cma04g02214 407 PRINTS HIV Rev interacting protein signature 105 126 IPR001164 GO:0005096
Cma04g02214 407 CDD ArfGap 56 162 - -
Cma04g02214 407 ProSiteProfiles C2 domain profile. 232 349 IPR000008 -
Cma04g02214 407 MobiDBLite consensus disorder prediction 175 198 - -
Cma04g02214 407 Pfam Putative GTPase activating protein for Arf 54 168 IPR001164 GO:0005096
Cma04g02214 407 ProSiteProfiles ARF GTPase-activating proteins domain profile. 53 175 IPR001164 GO:0005096
Cma04g02214 407 MobiDBLite consensus disorder prediction 175 203 - -
Cma04g02214 407 SUPERFAMILY ArfGap/RecO-like zinc finger 53 169 IPR037278 -
Cma04g02214 407 SMART C2_3c 252 347 IPR000008 -
Cma04g02214 407 Pfam C2 domain 252 342 IPR000008 -
Cma04g02214 407 Gene3D C2 domain 250 406 IPR035892 -
Cma04g02214 407 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 1 407 IPR044518 GO:0005096|GO:0005543
Cma04g02214 407 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 248 343 IPR035892 -
Cma04g02214 407 SMART arf_gap_3 53 176 IPR001164 GO:0005096
Cma04g02214 407 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD11-RELATED 1 407 - -
Cma04g02214 407 Gene3D Arf GTPase activating protein 34 175 IPR038508 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01337 Cma-Chr4:6824795 Cma04g02214 Cma-Chr4:15444552 4.54E-180 dispersed
Cma04g02214 Cma-Chr4:15444552 Cma18g00867 Cma-Chr18:7545002 1.55E-172 dispersed
Cma15g00820 Cma-Chr15:4119375 Cma04g02214 Cma-Chr4:15444552 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02214 K12486 - csv:101215531 707.212