Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma04g02246 | ATGATTAGAGCCCNCTGTTCCCAAACACTCTCTTCTTCTTCAAACCCCCAAATTCAGCAAAAACTATCTTCAAATCCTTCAAATCCGCCATTACCAGACCTTCAATTTCTTAAAGCCATGTCTGGTTCTGATGGCGTCGCTCACAACAATGGCGCCATAATTCCCCACTCCCAACAGAGCAACCAGACCACCAACAATGGCGCTCTGCCTCTCAAAAAACCCCCTGCTAAGGACCGCCACAGCAAGGTTGATGGCCGTGGCCGTCGTATTCGTATGCCCATCATTTGTGCTGCTCGTGTCTTTCAACTCACCCGCGAGTTGGGCCACAAATCCGACGGTCAGACCATTGAGTGGCTCCTCCGTCAAGCAGAGCCCTCCATTATTGCCGCCACTGGCACCGGCACTACTCCGGCTAGCTTCTCCACCATCTGCGCCTCCCTCCGTGGCACTCCTGCCACTCTTTCCTCTTCTTCTCCTGCTTCTCTCGACCATAAACCCCTTTTGCCTCCTGCCCCTTTCATTCTCGGTAAGCGCGTTAGACCTGACGACGATGCAGGTCATAAAGACAACGACGGCGGAGGCGGCGGCGGCGGTAACGGTGGTGGTGGGGCCATTTCTGTCGGCCCTTCTGTTGGTTCCATTATGGGTTCAGCTGCCGCGGGTGGATACTGGGCGTTTCCAGCTAGGTCGGATTTCGGACAGGTATGGAGTTTCGCCGCTGCTGCAGCTCCGGAGATGGTGATTCAACCGACGGCGATTTCTCATCAGGCGTCGTTATTCGCTCAGCAGCAATCAATTGGAGAAGCCTCGGCGGCGAAAGTGGGAAATTACCTTCCAGGTCATCTGAATTTGCTTGCTTCTTTATCAGGTGGACAGGGAAGTTCCGGGCGGAGAGACAACGACCACCGTTGA | 912 | 54.5 | MIRAXCSQTLSSSSNPQIQQKLSSNPSNPPLPDLQFLKAMSGSDGVAHNNGAIIPHSQQSNQTTNNGALPLKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTICASLRGTPATLSSSSPASLDHKPLLPPAPFILGKRVRPDDDAGHKDNDGGGGGGGNGGGGAISVGPSVGSIMGSAAAGGYWAFPARSDFGQVWSFAAAAAPEMVIQPTAISHQASLFAQQQSIGEASAAKVGNYLPGHLNLLASLSGGQGSSGRRDNDHR | 303 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 15663375 | 15664286 | - | CmaCh04G022460.1 | Cma04g02246 | 293327 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma04g02246 | 303 | MobiDBLite | consensus disorder prediction | 1 | 83 | - | - | |
Cma04g02246 | 303 | MobiDBLite | consensus disorder prediction | 155 | 207 | - | - | |
Cma04g02246 | 303 | MobiDBLite | consensus disorder prediction | 52 | 69 | - | - | |
Cma04g02246 | 303 | MobiDBLite | consensus disorder prediction | 1 | 31 | - | - | |
Cma04g02246 | 303 | ProSiteProfiles | TCP domain profile. | 76 | 130 | IPR017887 | - | |
Cma04g02246 | 303 | PANTHER | TRANSCRIPTION FACTOR TCP21-RELATED | 40 | 300 | - | - | |
Cma04g02246 | 303 | PANTHER | TRANSCRIPTION FACTOR TCP4-RELATED | 40 | 300 | IPR005333 | GO:0003700 | |
Cma04g02246 | 303 | Pfam | TCP family transcription factor | 76 | 158 | IPR017887 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma04g02246 | Cma-Chr4:15663375 | Cma18g00810 | Cma-Chr18:7082679 | 5.52E-77 | dispersed | |
Cma15g00788 | Cma-Chr15:3930481 | Cma04g02246 | Cma-Chr4:15663375 | 7.57E-131 | wgd | |
Cma04g01259 | Cma-Chr4:6439273 | Cma04g02246 | Cma-Chr4:15663375 | 8.01E-100 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34940 | PF03634 | TCP | 4.40E-31 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma04g02246 | K16221 | - | csv:101214586 | 367.851 |