Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02246 ATGATTAGAGCCCNCTGTTCCCAAACACTCTCTTCTTCTTCAAACCCCCAAATTCAGCAAAAACTATCTTCAAATCCTTCAAATCCGCCATTACCAGACCTTCAATTTCTTAAAGCCATGTCTGGTTCTGATGGCGTCGCTCACAACAATGGCGCCATAATTCCCCACTCCCAACAGAGCAACCAGACCACCAACAATGGCGCTCTGCCTCTCAAAAAACCCCCTGCTAAGGACCGCCACAGCAAGGTTGATGGCCGTGGCCGTCGTATTCGTATGCCCATCATTTGTGCTGCTCGTGTCTTTCAACTCACCCGCGAGTTGGGCCACAAATCCGACGGTCAGACCATTGAGTGGCTCCTCCGTCAAGCAGAGCCCTCCATTATTGCCGCCACTGGCACCGGCACTACTCCGGCTAGCTTCTCCACCATCTGCGCCTCCCTCCGTGGCACTCCTGCCACTCTTTCCTCTTCTTCTCCTGCTTCTCTCGACCATAAACCCCTTTTGCCTCCTGCCCCTTTCATTCTCGGTAAGCGCGTTAGACCTGACGACGATGCAGGTCATAAAGACAACGACGGCGGAGGCGGCGGCGGCGGTAACGGTGGTGGTGGGGCCATTTCTGTCGGCCCTTCTGTTGGTTCCATTATGGGTTCAGCTGCCGCGGGTGGATACTGGGCGTTTCCAGCTAGGTCGGATTTCGGACAGGTATGGAGTTTCGCCGCTGCTGCAGCTCCGGAGATGGTGATTCAACCGACGGCGATTTCTCATCAGGCGTCGTTATTCGCTCAGCAGCAATCAATTGGAGAAGCCTCGGCGGCGAAAGTGGGAAATTACCTTCCAGGTCATCTGAATTTGCTTGCTTCTTTATCAGGTGGACAGGGAAGTTCCGGGCGGAGAGACAACGACCACCGTTGA 912 54.5 MIRAXCSQTLSSSSNPQIQQKLSSNPSNPPLPDLQFLKAMSGSDGVAHNNGAIIPHSQQSNQTTNNGALPLKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTICASLRGTPATLSSSSPASLDHKPLLPPAPFILGKRVRPDDDAGHKDNDGGGGGGGNGGGGAISVGPSVGSIMGSAAAGGYWAFPARSDFGQVWSFAAAAAPEMVIQPTAISHQASLFAQQQSIGEASAAKVGNYLPGHLNLLASLSGGQGSSGRRDNDHR 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15663375 15664286 - CmaCh04G022460.1 Cma04g02246 293327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02246 303 MobiDBLite consensus disorder prediction 1 83 - -
Cma04g02246 303 MobiDBLite consensus disorder prediction 155 207 - -
Cma04g02246 303 MobiDBLite consensus disorder prediction 52 69 - -
Cma04g02246 303 MobiDBLite consensus disorder prediction 1 31 - -
Cma04g02246 303 ProSiteProfiles TCP domain profile. 76 130 IPR017887 -
Cma04g02246 303 PANTHER TRANSCRIPTION FACTOR TCP21-RELATED 40 300 - -
Cma04g02246 303 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 40 300 IPR005333 GO:0003700
Cma04g02246 303 Pfam TCP family transcription factor 76 158 IPR017887 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02246 Cma-Chr4:15663375 Cma18g00810 Cma-Chr18:7082679 5.52E-77 dispersed
Cma15g00788 Cma-Chr15:3930481 Cma04g02246 Cma-Chr4:15663375 7.57E-131 wgd
Cma04g01259 Cma-Chr4:6439273 Cma04g02246 Cma-Chr4:15663375 8.01E-100 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34940 PF03634 TCP 4.40E-31 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02246 K16221 - csv:101214586 367.851