Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02250 ATGGCGAGCCGATACTGGATGGTCTCTTTACCCGTTCAAGGCTCCGCTTCTTCCCTATGGAATCGTCTCCAAGAACAAATCTCCAAGCACTCTTTCGATACTCCTCTTTACAGATTCAATATCCCTAATCTCCGCGTTGGAACGCTGGATTCGCTTCTTTCCCTTAGCGATGATCTCCTGAAGTCGAACAGCTTTGTGGAAGGAGTTTCTCAAAAGATCAGACGGCAGATCGAGGAACTGGAGAAGGTTTCTGGTGTGGAGAGCCACGGCTTGACGGTTGATGGAGTCCCCGTCGATTCGTACCTTACTAGGTTTGTGTGGGATGAAGCCAAGTACCCAACAATGTCGCCTCTGAGAGATGTTGTGGATAGCATTCACACTCAAGTGGCCAAGATTGAGGATGACCTCAAGATTCGGGTTGCTGAGTACAATAACGTGCGGAGTCAACTTAATGCCATTAACAGAAAGCAAAGTGGAAGCTTGGCAGTCCGTGATATTTCCAATCTTGTAAAACCAGAGGACATAATTACCTCAGAACATCTCGAAACCCTTCTTGTGATTGTTCCCAAGTATTCACAGAAAGAATGGCTATCTAGCTATGAAACACTGACTAGCTATGTGGTTCCCAGGTCTTCCAAGAAGTTATACGAGGATAATGAGTATGCCCTTTACACTGTAACACTCTTTAGTCGCGTTGCAGACAATTTCAAAACAAGCGGACGTGAAAGAGGGTTCCAGATTCGTGAATTTGAATATAGTCCAGAAGCACAGGAGAGTAGAAAACAGGAGTTAGAAAAGTTGGTGCAGGACCAGGAAAGTATGAGAAGTTCTTTATTGCAGTGGTCCTACGCTAGTTATGCTGAGGTCTTCATTTCCTGGATGCACTTTTGTGCTGTACGTGTCTTTGCTGAGAGTATCCTGAGATATGGTTTACCACCATCCTTCTTGGCATCTGTTTTGGCACCATCTGTTAAAAGTGAGAAGAAAGTTAGGTCAATCCTTGAAGGTTTGTGCGACAGTGCTAACAGTACATATTGGAAAACTGAAGATGAAATGGGAGCAGGGATGGCTGGTCTTGGAGGAGAATCTGATGCACACCCATATGTGTCCTTCACAATCAATCTTGCCTAA 1131 44.92 MASRYWMVSLPVQGSASSLWNRLQEQISKHSFDTPLYRFNIPNLRVGTLDSLLSLSDDLLKSNSFVEGVSQKIRRQIEELEKVSGVESHGLTVDGVPVDSYLTRFVWDEAKYPTMSPLRDVVDSIHTQVAKIEDDLKIRVAEYNNVRSQLNAINRKQSGSLAVRDISNLVKPEDIITSEHLETLLVIVPKYSQKEWLSSYETLTSYVVPRSSKKLYEDNEYALYTVTLFSRVADNFKTSGRERGFQIREFEYSPEAQESRKQELEKLVQDQESMRSSLLQWSYASYAEVFISWMHFCAVRVFAESILRYGLPPSFLASVLAPSVKSEKKVRSILEGLCDSANSTYWKTEDEMGAGMAGLGGESDAHPYVSFTINLA 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15710440 15714641 - CmaCh04G022500.1 Cma04g02250 293331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02250 376 SUPERFAMILY Vacuolar ATP synthase subunit C 2 375 IPR036132 GO:0015078|GO:0033180|GO:1902600
Cma04g02250 376 Pfam V-ATPase subunit C 5 369 IPR004907 GO:0033180|GO:0046961|GO:1902600
Cma04g02250 376 Gene3D Vacuolar atp synthase subunit c; domain 1 5 334 - -
Cma04g02250 376 Gene3D - 163 251 - -
Cma04g02250 376 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 1 376 IPR004907 GO:0033180|GO:0046961|GO:1902600
Cma04g02250 376 CDD V-ATPase_C 5 373 IPR004907 GO:0033180|GO:0046961|GO:1902600
Cma04g02250 376 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 1 376 - -
Cma04g02250 376 Gene3D - 41 312 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g00782 Cma-Chr15:3890647 Cma04g02250 Cma-Chr4:15710440 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02250 K02148 - csv:101221574 699.893