Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02252 ATGATGTCCATCATCAACCAGGATCACTGCCCACTCCAAGACGTCAACCGCCTCGCCGCCGCTTCCCCCGATCTCGCCGCCGCGGTTCCCGGCTTCGGCGGCGGTGGAGTCCACCGCAAGAAGAGGATGGCCCGCCAGCGCCGCTCTTCTTCTAATCTTCACTTCTCCTTTCCTCCTTCTTCTTCTTCCGCCCACCTCCCTCCCCCTCGGGTAATTGATCCAAGAAGGCTGAAGTTTCTTTTTCAGAAGGAGCTGAAGAACAGTGATGTTAGCTCTCTTAGGAGAATGATACTCCCAAAGAAAGCAGCTGAAACTCACCTCCCAACTTTGGAGTCTAAAGAAGGAATCATCATCACCATGGATGACTTGGATGGAGTCCATGTTTGGAACTTTAAATATAGGTTTTGGCCGAATAACAATAGTAGAATGTACGTACTTGAAAACACGGGGGACTTCGTCAATGCCCATGGCATACAACTAGGAGATTTCATCTTGGTTTACCAAGATTTTGAAGATCATAGCTACGTCATTCAAGCAAAAAAGGCGTCTGATCCAGAAATATATTCCGACATAGCAAATAGTTGCGTTATGAATGGCGACATTGTGTTTCAAGACTTCAATGCTAGCAAAGCTGCTAACTCCATGGCTCGAAGCTTCCAAGGTGGGTTCTGCGCCACGTTAATGGCGGAAACTACTAATACAGAGGAGCCCGTATTTGATGCGAAGCGCAAAGTTGATCCCTGCTCTGAAGAGAAACAGGAGCGTTCGAACAAAATTCAGAAGCTCGAAGTGGTTGAGGGCGATTCCTGCAATGCTGTGAAGAATGGTGTGAGTGGTGAAGGGATTGATGGCGATTCTTTGGTTGAGGGAGGGAAAGATGGTGGAGTTTGTGTGGATGTGGGAGAAGCAGAAGATGAGGATTACGAGGAGGTGGACAGCGACGAGGATGAGGAGGAAGATGACAGTGACGATGGTGGAAAGTTGAGTGGGAAAGTGGATGAGGACCGTAAGGGGAAGGGTATCATGAAGGACGACAAAGGAAAAGGGAAATTTATTGATGAGGAGGAAGACGACGATGATGGAAGTGAGTTAGGCTCTGAAGAGAGCGATTTGTCGGATGATCCGCTTACGGAGGTCGATTTGGACAACATACTTCCTTCAAGAACGCGGAGGCGGACTGTTCATCCTGGAGTTTATTTTGCTACGGATCTGGGGAACGAAAACGATGATAGCAGCGATAGCGATGCTTGA 1251 48.52 MMSIINQDHCPLQDVNRLAAASPDLAAAVPGFGGGGVHRKKRMARQRRSSSNLHFSFPPSSSSAHLPPPRVIDPRRLKFLFQKELKNSDVSSLRRMILPKKAAETHLPTLESKEGIIITMDDLDGVHVWNFKYRFWPNNNSRMYVLENTGDFVNAHGIQLGDFILVYQDFEDHSYVIQAKKASDPEIYSDIANSCVMNGDIVFQDFNASKAANSMARSFQGGFCATLMAETTNTEEPVFDAKRKVDPCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGEGIDGDSLVEGGKDGGVCVDVGEAEDEDYEEVDSDEDEEEDDSDDGGKLSGKVDEDRKGKGIMKDDKGKGKFIDEEEDDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFATDLGNENDDSSDSDA 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15722559 15727056 - CmaCh04G022520.1 Cma04g02252 293333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02252 416 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR FUS3 38 246 - -
Cma04g02252 416 ProSiteProfiles B3 DNA-binding domain profile. 81 183 IPR003340 GO:0003677
Cma04g02252 416 MobiDBLite consensus disorder prediction 300 323 - -
Cma04g02252 416 MobiDBLite consensus disorder prediction 36 70 - -
Cma04g02252 416 CDD B3_DNA 79 181 IPR003340 GO:0003677
Cma04g02252 416 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 38 246 IPR044800 GO:0003700
Cma04g02252 416 SMART B3_2 81 183 IPR003340 GO:0003677
Cma04g02252 416 Gene3D - 77 194 IPR015300 -
Cma04g02252 416 MobiDBLite consensus disorder prediction 324 353 - -
Cma04g02252 416 MobiDBLite consensus disorder prediction 354 377 - -
Cma04g02252 416 Pfam B3 DNA binding domain 81 179 IPR003340 GO:0003677
Cma04g02252 416 SUPERFAMILY DNA-binding pseudobarrel domain 79 176 IPR015300 -
Cma04g02252 416 MobiDBLite consensus disorder prediction 272 416 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02252 Cma-Chr4:15722559 Cma17g01237 Cma-Chr17:8487680 1.52E-38 dispersed
Cma15g00780 Cma-Chr15:3881625 Cma04g02252 Cma-Chr4:15722559 3.87E-59 transposed
Cma15g00779 Cma-Chr15:3869619 Cma04g02252 Cma-Chr4:15722559 1.42E-94 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34941 PF02362 B3 1.10E-16 CL0405 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02252 - - csv:101222512 281.182