Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02256 ATGTTATCGATTGAGAGTGATTGGGTAAAGCTTGATATGAAGCTTTCAACATCAGGGTTTGGTCAGCAGGATCACGAAGGAGGGGAAAAGAAATGCTTGAATTCAGAGCTATGGCATGCATGCGCGGGGCCCCTTGTGTCCCTCCCAACTTCTGGGACTCGGGTTGTCTACTTCCCTCAGGGGCACAGCGAACAGGTTGCTGCCACAACCAACAAAGAAGTTGATGGGCATATACCGAATTACCCGAACCTGCCTCCCCAGTTGATATGTCAACTTCACAACGTTACGATGCATGCAGATGTGGAAACGGATGAAGTATACGCTCAAATGACATTACAGCCGCTGACTGCACAAGAGCAAAAGGATACATTTCTACCCATGGAATTGGGGATTCCAAGTAGACAGCCAACAAACTACTTTTGCAAGACGTTGACTGCAAGTGATACGAGCACTCATGGAGGATTCTCTGTACCTCGTCGTGCTGCTGAGAAAGTTTTTCCTCCGCTGGACTTTTCACAGCAGCCACCAGCGCAAGAGCTGATTGCACGGGATCTTCACGATGTTGAATGGAAGTTTAGGCATATTTTTCGAGGACAGCCAAAACGACATCTTCTTACAACTGGTTGGAGTGTGTTTGTTAGTGCCAAAAGATTGGTTGCTGGGGATTCTGTGCTTTTTATATGGAACGAAAAAAATCAGCTTCTTTTGGGTATACGCCGTGCCACAAGACCACAAACTGTGATGCCCTCTTCTGTTTTATCAAGTGATAGCATGCACATTGGACTCCTTGCGGCTGCTGCTCATGCTGCCGCAACCAATAGCTGTTTCACAGTTTTCTACAACCCCAGGGCTAGCCCATCAGAGTTTGTCATCCCTCTGACAAAATATGTTAAAGCTGTATTTCATACCCGTGTTTCAGTAGGGATGCGTTTTCGGATGCTTTTTGAGACTGAAGAGTCAAGCGTTCGAAGGTACATGGGTACTATAACTGGAATAAGTGATCTCGATCCTGTTCGTTGGTCGAATTCTCATTGGCGTTCTGTCAAGGTCGGGTGGGATGAGTCAACAGCTGGGGAGAGGCAGCCAAGGGTATCGTTGTGGGAAATTGAGCCTTTAACTACATTTCCGATGTATCCTTCCCTTTTTCCGCTTCGATTGAAACGTCCATGGCATCCTGGAGTCTCGTCTGTTCATGATAACAGAGATGATGCATCGAATGGCTTAATGTGGCTACGGGGAGGAGTCGGGGAACAAGCTCTACACTTGCTGAATTTGCAATCTGCGGGTTCACTGCCCTGGTTGCAGCAGAGACTTGATTCTTCCATGTTTGGAAATGATCATAACCAACAGTATCAAGCCATGTTGGCTGCAGGAATGCCGAACCTTGGAGGTGTCGATATGCTGAGACAGCAAATAATGCATCTTCAACAGCCGTTCCAATACGCTCAACAGGCAGGCCTCCATAATTCTCTGTTGCAGCTGCAACAACAGCAATTGGTTCAACAATCTATGCCTCAGAACATCCTGCAAGCACCAAGCCAAGTTATGTCCGAAAACCTACCCCAACACATTCTTCAGCAAACGCTACAAAATCAACCCGAGGATCTGCCAAACCAGCAACAGCATACGTATCACGATACCGTTCAGGTTCAAAGCAATCAATTTCATCAGGGCGGGCATTCAAATGTGCCATCGCCCACGTTTCCCAGATCAAACCTTATGGATTCGAATTCAAATTACCCAGAATCCATTTCCTCTAGAAGAAACATAATTGCTTCATCATGTGCTGAAGGGACTGGAAATCTTTCCAATATTTATAGAAGTGGGCAATCGATCTTAACCGAGCAGTTACCTCAACAATCTCCTGTTTCTAAGAATGCTCATTCACCGGTCGATGCTCACCCAAACTCGATGTCCTTTCCATTTTCTGGTAGAGACTCGATTTTGGAGCTGGGAAATTGTAATTCAGATTCTCCAAGTCCTACACTTTTTGGTGTTAATATTGATTCATCTGGGCTTCTGCTTCCCTCTAATGTGCCCACTTATGCTTCTCCATCAATTGCTCCTGATTCAACCTCAATGCCACTGGGAGATTCTGGATTTCAGAATTCTTTGTACAATTGTGTTCAAGGCTCTTCCGAGTTGTTGCACAGCTCGGGGCAAGTTGATCCGTCGAATCCAACTCAGACATTTGTGAAGGTTTACAAAACTGGGTCTGTTGGGCGTTCGCTAGACATCTCCCGGTTCAGTAGCTATCAGGAGCTGCGAGAGGAGCTGGCTCAGATGTTTGGCATAGAGGGACAGTTGGAAGACCCTTGTAGATCAGGCTGGCAGCTTGTATTTGTCGACAGGGAGAACGATGCACTTCTCCTTGGAGACGACCCTTGGGAGGCATTTGTCAATAATGTTTGGTATATCAAGATACTTTCTCCTCAAGACGTTCAGGAACTAAGGGAACAGGTAATCGAGTCCTTCAACCCTATCGATGGTCAGCGACTAACCAGTGGTGGCAATGAAGCCGAAAATGTTTCGGGGCTACCGTCTGTTGGTTCGTTGGAATACTAA 2565 46.43 MLSIESDWVKLDMKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQGHSEQVAATTNKEVDGHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTAQEQKDTFLPMELGIPSRQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRATRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWSNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGVSSVHDNRDDASNGLMWLRGGVGEQALHLLNLQSAGSLPWLQQRLDSSMFGNDHNQQYQAMLAAGMPNLGGVDMLRQQIMHLQQPFQYAQQAGLHNSLLQLQQQQLVQQSMPQNILQAPSQVMSENLPQHILQQTLQNQPEDLPNQQQHTYHDTVQVQSNQFHQGGHSNVPSPTFPRSNLMDSNSNYPESISSRRNIIASSCAEGTGNLSNIYRSGQSILTEQLPQQSPVSKNAHSPVDAHPNSMSFPFSGRDSILELGNCNSDSPSPTLFGVNIDSSGLLLPSNVPTYASPSIAPDSTSMPLGDSGFQNSLYNCVQGSSELLHSSGQVDPSNPTQTFVKVYKTGSVGRSLDISRFSSYQELREELAQMFGIEGQLEDPCRSGWQLVFVDRENDALLLGDDPWEAFVNNVWYIKILSPQDVQELREQVIESFNPIDGQRLTSGGNEAENVSGLPSVGSLEY 854
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15752330 15767709 - CmaCh04G022560.1 Cma04g02256 293337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02256 854 ProSiteProfiles B3 DNA-binding domain profile. 140 242 IPR003340 GO:0003677
Cma04g02256 854 Gene3D - 304 376 - -
Cma04g02256 854 ProSiteProfiles PB1 domain profile. 729 814 IPR000270 GO:0005515
Cma04g02256 854 MobiDBLite consensus disorder prediction 832 854 - -
Cma04g02256 854 CDD B3_DNA 139 240 IPR003340 GO:0003677
Cma04g02256 854 SUPERFAMILY CAD & PB1 domains 720 803 - -
Cma04g02256 854 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 13 828 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cma04g02256 854 Pfam AUX/IAA family 726 814 IPR033389 -
Cma04g02256 854 Pfam B3 DNA binding domain 140 241 IPR003340 GO:0003677
Cma04g02256 854 Gene3D - 725 818 - -
Cma04g02256 854 PANTHER AUXIN RESPONSE FACTOR 8 13 828 - -
Cma04g02256 854 SMART B3_2 140 242 IPR003340 GO:0003677
Cma04g02256 854 SUPERFAMILY DNA-binding pseudobarrel domain 124 269 IPR015300 -
Cma04g02256 854 Pfam Auxin response factor 266 349 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cma04g02256 854 Gene3D - 138 242 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01429 Cma-Chr3:8950035 Cma04g02256 Cma-Chr4:15752330 0 dispersed
Cma04g02256 Cma-Chr4:15752330 Cma07g00079 Cma-Chr7:469263 0 dispersed
Cma15g00776 Cma-Chr15:3829460 Cma04g02256 Cma-Chr4:15752330 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34943 PF02309 AUX_IAA 9.50E-08 CL0072 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02256 - - csv:101208098 1588.93