Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02270 ATGTCCAAAGATGAGATTATAATTTTGGATTGTATCCTCAGTCCATTTTGCATTAGGGTTAAGATTGCTTTGAATGAGAAGGGAGTGAGCTATGAGAGCAAAGAAGAGGACTTGTTTGGTTGGAAAGGTGGCAAAAGTGAGCTATTGCTCAAATCTAACCCTATCCATAAGAAAGTCCCTGTTCTCTTGCATAATGGTAACCCACTTAATGAAAGCTCCAACATTGTCACCTATATTGACGAGACATGGCCTTCTTCTTCCCCTCTTCTTCCATCTTCCCCCTACGAAAGAGCTCGAGCTCGCTTCTGGATCGACTACATCGACAAAAAGGTGTTCGAGACGGGTGGCAAGATTTGGAGGAGCAATGGAGATGAACAAGAGGCAGCCAAGAAGGAGTTCATAGAGATTTTGAAGCAATTGGAGGAAGCTTTAGGGGATAATGATTTCTTTGGAGGAGAAAGGTTTGGGATTGTGGATGTGATTGCTATCCCATTCAGTTGTTGGTTCTATGCTTTTGAGAAAGTTGGGGGCTTCAAAGTGGAAGAACATTGCCCAAAGCTATCAAATTGGGAGAAGAGGTGCTTGTTGAAGGAGAGTGTGGCTAGTGTCATTCCTAGCCCTGACATGGTGTATGGGTTTGTGAGCTCCATGAGGAAGAAGCTTGGGCTTGAATAG 675 43.85 MSKDEIIILDCILSPFCIRVKIALNEKGVSYESKEEDLFGWKGGKSELLLKSNPIHKKVPVLLHNGNPLNESSNIVTYIDETWPSSSPLLPSSPYERARARFWIDYIDKKVFETGGKIWRSNGDEQEAAKKEFIEILKQLEEALGDNDFFGGERFGIVDVIAIPFSCWFYAFEKVGGFKVEEHCPKLSNWEKRCLLKESVASVIPSPDMVYGFVSSMRKKLGLE 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15857294 15858045 - CmaCh04G022700.1 Cma04g02270 293351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02270 224 CDD GST_C_Tau 95 214 IPR045074 GO:0004364|GO:0006749
Cma04g02270 224 SUPERFAMILY Thioredoxin-like 12 111 IPR036249 -
Cma04g02270 224 SFLD Main.3: Omega- and Tau-like 2 221 IPR045073 -
Cma04g02270 224 PANTHER GLUTATHIONE S-TRANSFERASE, AMINO-TERMINAL DOMAIN PROTEIN 7 216 - -
Cma04g02270 224 Gene3D Glutaredoxin 2 92 - -
Cma04g02270 224 SUPERFAMILY GST C-terminal domain-like 81 221 IPR036282 -
Cma04g02270 224 Coils Coil 123 143 - -
Cma04g02270 224 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 93 223 IPR010987 -
Cma04g02270 224 Pfam Glutathione S-transferase, C-terminal domain 123 194 IPR004046 -
Cma04g02270 224 Pfam Glutathione S-transferase, N-terminal domain 13 84 IPR004045 -
Cma04g02270 224 CDD GST_N_Tau 6 83 - -
Cma04g02270 224 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 7 216 IPR045073 -
Cma04g02270 224 Gene3D - 93 224 - -
Cma04g02270 224 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 4 87 IPR004045 -
Cma04g02270 224 SFLD Main (cytGST) 2 221 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02270 Cma-Chr4:15857294 Cma16g00465 Cma-Chr16:2333498 1.23E-80 dispersed
Cma04g02270 Cma-Chr4:15857294 Cma16g00464 Cma-Chr16:2326120 1.68E-76 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02270 K00799 - csv:101213628 379.793