Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02271 ATGTCGCCATCTCTTCCACTTCCCTTCCTCTTCACAGTAGCCGTAGCTCTCACATCTCCAGTAGCCTCCCATTTCTCTTCTTCCACCTCCTCGCCGTTGCCGGAGTCAGCTCCGTCTCTTTCCGACTGGAGATCTGCTCGGGCCACCTACTACGCCGCCTCCAATCCTCGTGATGCGGTCGGCGGAGCATGTGGATATGGCGATTTGGTGAAGGCAGGTTATGGCATGGCGACGGTGGGTCTCAGTGAGGCGCTGTTCGAACGTGGCCAGATCTGTGGTGCTTGCTTTCAGCTCCGATGCGTGGAGGACCTCCGGTGGTGTATTCCTGGCACTTCTATTATTGTCACTGTTACTAATTTCTGTGCACCTAATTATGGCTTCACGGCTGACGGTGGAGGCCGTTGTAATCCTCCTAACAAGCATTTTGTGCTCCCTATTGAAGCGTTTGAGAAGATCGCTATCTGGAAGGCGGGAAACATGCCTGTTCAGTATCGGAGGATCAAATGTCGAAAGGAGGGGGGCGTTCGATATACGATTTCTGGGTATGGCATCTACCTCTCAGTGTTGATAAGCAACGTTGCAGGCGCCGGAGATGTCAGTGCTGTAAAGATCAAGGGCTCAAGAACTGGTTGGCTTTCGATGGGTCGAAATTGGGGTCAAAACTGGCACATTAACGCCGATTTGAACAATCAGGCCCTGTCCTTTGAAGTCACTAGCAGTGACGGAGTAACAATTACGTCCTACAATGTTGCTCCAAAGAATTGGAACTTCGGACAGACTTTTGAAGGCAAACAATTTGAATCTTGA 807 51.05 MSPSLPLPFLFTVAVALTSPVASHFSSSTSSPLPESAPSLSDWRSARATYYAASNPRDAVGGACGYGDLVKAGYGMATVGLSEALFERGQICGACFQLRCVEDLRWCIPGTSIIVTVTNFCAPNYGFTADGGGRCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRRIKCRKEGGVRYTISGYGIYLSVLISNVAGAGDVSAVKIKGSRTGWLSMGRNWGQNWHINADLNNQALSFEVTSSDGVTITSYNVAPKNWNFGQTFEGKQFES 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15858946 15861944 - CmaCh04G022710.1 Cma04g02271 293352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02271 268 Gene3D - 28 170 IPR036908 -
Cma04g02271 268 SUPERFAMILY Barwin-like endoglucanases 42 192 IPR036908 -
Cma04g02271 268 Gene3D - 175 266 IPR036749 -
Cma04g02271 268 PANTHER EXPANSIN-A13 26 267 - -
Cma04g02271 268 PRINTS Expansin signature 73 87 IPR002963 GO:0009664
Cma04g02271 268 PRINTS Expansin signature 100 111 IPR002963 GO:0009664
Cma04g02271 268 PRINTS Expansin signature 113 123 IPR002963 GO:0009664
Cma04g02271 268 PRINTS Expansin signature 132 149 IPR002963 GO:0009664
Cma04g02271 268 PRINTS Expansin signature 149 162 IPR002963 GO:0009664
Cma04g02271 268 PRINTS Expansin signature 173 185 IPR002963 GO:0009664
Cma04g02271 268 PRINTS Expansin signature 185 206 IPR002963 GO:0009664
Cma04g02271 268 PRINTS Expansin signature 220 241 IPR002963 GO:0009664
Cma04g02271 268 PRINTS Expansin signature 249 265 IPR002963 GO:0009664
Cma04g02271 268 Pfam Expansin C-terminal domain 175 252 IPR007117 -
Cma04g02271 268 SMART dpbb_1 78 164 IPR007112 -
Cma04g02271 268 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 61 174 IPR007112 -
Cma04g02271 268 PANTHER EXPANSIN-A15 26 267 IPR002963 GO:0009664
Cma04g02271 268 PRINTS Expansin/Lol pI family signature 42 57 IPR007118 GO:0005576
Cma04g02271 268 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576
Cma04g02271 268 PRINTS Expansin/Lol pI family signature 82 100 IPR007118 GO:0005576
Cma04g02271 268 PRINTS Expansin/Lol pI family signature 157 173 IPR007118 GO:0005576
Cma04g02271 268 PRINTS Expansin/Lol pI family signature 211 225 IPR007118 GO:0005576
Cma04g02271 268 PRINTS Expansin/Lol pI family signature 249 263 IPR007118 GO:0005576
Cma04g02271 268 Pfam Lytic transglycolase 79 164 IPR009009 -
Cma04g02271 268 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 184 263 IPR007117 -
Cma04g02271 268 SUPERFAMILY PHL pollen allergen 171 263 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02271 Cma-Chr4:15858946 Cma01g00609 Cma-Chr1:3176629 5.43E-93 dispersed
Cma15g00765 Cma-Chr15:3755522 Cma04g02271 Cma-Chr4:15858946 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02271 - - csv:101206236 505.753