Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02275 ATGGTTCTTTCCAAGACTGCTTCTCAGTCGGATGTCTCCGTCCATTCCACGTTCGCTTCGCGATATGTGCGAACCTCTCTCCCGAGGTTCAAAATGTCGGAAAATTCAATCCCTAAGGAAGCTGCGTTCCAGATCATCAATGATGAACTCATGCTCGATGGAAACCCTAGGCTGAATCTGGCCTCCTTCGTTACCACTTGGATGGAGCCTGAGTGCGATAAACTCATCATGGCCGCCATTAACAAGAATTACGTCGATATGGATGAATATCCTGTCACTACAGAGCTCCAGAATCGATGTGTGAACATGATAGCTCACTTGTTCAATGCCCCATTGGGGGAGAATGAGACGGCGGTGGGAGTTGGAACAGTGGGATCGTCGGAGGCCATAATGTTGGCTGGCTTGGCTTTCAAGAGAAAGTGGCAGAACAGAAGGAAGACTGAAGGCAAGCCCTATGACAACCCCAACATTGTCACCGGAGCTAATGTCCAGGTATGCTGGGAGAAATTCGCAAGGTACTTCGAGGTAGAACTGAAGGAGGTGAAATTGAGGGAAGGTTACTACGTGATGGATCCAGAGAAAGCTGTGAATTTGGTTGATGAGAACACCATCTGTGTAGCAGCCATCTTGGGCTCCACTCTCAATGGAGAATTCGAAGATGTCAAGCTCTTAAACGATCTCTTAATCGAGAAGAATAAGGAAACCGGATGGGAGACTCCTATTCATGTTGATGCTGCTAGTGGAGGGTTCATTGCCCCATTCATATACCCTGATCTAGAATGGGACTTTAGGCTGCCCCTTGTAAAGAGTATTAATGTGAGTGGCCATAAGTATGGGCTTGTTTATGCTGGAATTGGTTGGGTTATCTGGAGGAACAAGGAAGACTTGCCTGAAGAACTCATCTTCCATATCAACTATCTTGGCGCCGACCAACCCACTTTCACTCTCAATTTCTCCAAAGGTTCTAGCCAAGTCATTGCTCAGTATTACCAATTGATCCGCTTGGGTTATGAGGGATACCAAAACGTGATGGAGAACTGCAAAGAAAACATGATTGTTCTCAAGGAAGGACTGGAAAAAACAGGGCGTTTCAACATAGTGTCTAAGGACGAAGGAGTTCCACTAGTGGCATTCTCCTTGAAAGACAGCAGTCGTCACACAGAGTTTGAAGTCTCAGAAATGCTTAGGAGGTTCGGGTGGATCGTGCCAGCTTACACGATGCCTCCGGACGCGCAACACATTACAGTTCTAAGAGTGGTGATCCGAGAAGATTTCTCACGCACACTTGCTGAGCGTCTAGTGAAAGACATTGAAAAGGTGATGCACGAGCTTGACATCCTCCCGTCAAGGGCTGATATCAAGATGACGGTGGCCGGAGAAGATACAAACCACGTCGTGGTGGCGAAGAAGAGTGCACTGGAGACACAGAGGGAGATCACCACTGCTTGGAGGAAGTTTGTGATGGATAAGAAGAAGACTAATGGAGTCTGTTAG 1494 47.32 MVLSKTASQSDVSVHSTFASRYVRTSLPRFKMSENSIPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMAAINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLGENETAVGVGTVGSSEAIMLAGLAFKRKWQNRRKTEGKPYDNPNIVTGANVQVCWEKFARYFEVELKEVKLREGYYVMDPEKAVNLVDENTICVAAILGSTLNGEFEDVKLLNDLLIEKNKETGWETPIHVDAASGGFIAPFIYPDLEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGYEGYQNVMENCKENMIVLKEGLEKTGRFNIVSKDEGVPLVAFSLKDSSRHTEFEVSEMLRRFGWIVPAYTMPPDAQHITVLRVVIREDFSRTLAERLVKDIEKVMHELDILPSRADIKMTVAGEDTNHVVVAKKSALETQREITTAWRKFVMDKKKTNGVC 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15881579 15885929 + CmaCh04G022750.1 Cma04g02275 293356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02275 497 SUPERFAMILY PLP-dependent transferases 15 444 IPR015424 -
Cma04g02275 497 TIGRFAM Glu-decarb-GAD: glutamate decarboxylase 16 444 IPR010107 GO:0004351|GO:0006536|GO:0030170
Cma04g02275 497 Pfam Pyridoxal-dependent decarboxylase conserved domain 37 381 IPR002129 GO:0016830|GO:0019752|GO:0030170
Cma04g02275 497 Gene3D - 1 65 - -
Cma04g02275 497 PANTHER GLUTAMATE DECARBOXYLASE 1 497 IPR010107 GO:0004351|GO:0006536|GO:0030170
Cma04g02275 497 Gene3D - 66 360 IPR015421 GO:0003824
Cma04g02275 497 Gene3D - 361 448 - -
Cma04g02275 497 PANTHER GLUTAMATE DECARBOXYLASE 1 497 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02158 Cma-Chr4:15139593 Cma04g02275 Cma-Chr4:15881579 0 dispersed
Cma04g02159 Cma-Chr4:15145154 Cma04g02275 Cma-Chr4:15881579 0 dispersed
Cma04g02275 Cma-Chr4:15881579 Cma15g00872 Cma-Chr15:4415249 0 dispersed
Cma01g00753 Cma-Chr1:4049515 Cma04g02275 Cma-Chr4:15881579 0 transposed
Cma15g00762 Cma-Chr15:3725168 Cma04g02275 Cma-Chr4:15881579 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02275 K01580 - csv:101216119 957.592