Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02279 ATGGCGCGCCGGAATTTGCTTCGGCTGTGTTTGTCATTTTCGGCGCTTGTTGTTTTGTTGTTCTTCCCTGCAGGAGAGGCTGACCTTGCATCGGACATGGCGGCGCTGGTGGTGCTTCAGAAAGCGATGGGCGCTCGGAGCCGGACTCGTCAATGGAACCTCTCCGATGAGACTCCGTGTTTGTGGTTTGGCGTTATTTGCGGCGGCGGGAGGGTTACTGAACTGCGGCTTCCCGGTGTTGGACTCTTTGGTCAACTTCCTCTAGGACTTGGAAATTTGACTCATCTGGAAACCCTATCTCTTCGTTCTAACATGCTTTCCGGTTCTATTCCATCTGATTTTGCAAACCTTCGCTCGCTCCGGAACATCTACTTGCAACGGAACTCGTTTTCCAGTGAGATTCCTTCTGTTCTCTTCAGTATACAGAGTCTGGTTCGCTTGAATTTGGCGCATAATCAGTTCGTCGGTCCGATTTCATCTGGATTCAATAATCTCACGAACTTAGAGGTTCTGAATTTGGAAGGGAATCAATTCGATGGATTCATTCCTGATTTGAACATTCCCTCGCTCAAAACTCTCAACGTTTCTTTCAATCGTCTCAACGGCTCAATCCCTACGCGATTGTCCGATCAACCAGCCAGCGTCTTCGACGGAAACTCACTCTGCGGGAAGCCACTGAGTCCTTGCCAAGGCGAGGAGAAGAAATTATCCACCGCAGCAATCGTTGGTATCGTAATCGGAGGTTTAATTGCATTTTTGATCATCGGTCTGATTTTGATCTTTCTATGTCGTAAAAGGATCAGGATTAACCGGCGGAATGATGCTCAGATGACGACGAGGTCGGAGGTCAAGAATGGCGGTGGAGGAAATGGAGGAATTAGGAATCAGAATGGTTTGGTGTTCTGTGGGAAAGGAGAAAGTGTGTTTGATTTGGAGGAACTGTTGAAGGCTTCTGCAGAGGTGTTGGGGAAGGGAGCTTTTGGGTCAACCTACAAGGCAGCTCTGGATATGGGGATGACCATGGCGGTGAAGAGATTGAGAGATGTCAAAGTTTCAGAGGAGGAATTCATGGAGAAGATTGAAAGCTTGGGGATGATGAATCATCAGAACTTAGTTCCCATTAATGCTTACTATTATGGCAGGGATGAGAAGCTTCTGGTTTGTGATTATGCCCCCATGGGAAGCTTATCCCTGCATTTACATGGCAACAAGGATTCTGGTAGGACTCCATTGAAATGGGAAGCAAGGGTTGGCATTATGCTCTCGGCTGGTCGTGGCATTTCGTATCTACATTCCCGACGACCTCCGACCTCCCATGGGAATATAAAGCCTTCAAACATTCTTCTCAACAGATCCCACACAGCTTGTGTCTCTGACTTCGGCCTAATTCAGATTGCAAGCCCTACCCCCACTCTAAACCACACTGTAGCCTACCGTGCCCCCGAAGTCACCGATCTACGAAAAGTATCCTTAAAAGCAGATGTTTACAGTTTTGGTATGGTAATTCTAGAGCTTCTAACAGGAAAGACTCCGAACTCATCGACGCTTAACGACGATGGCGTAGACCTCCCACGATGGGTGAAGTCGAAGGTCAACAAGAAGAAGACAGCAGAAGTGTTTGATGAGGAGCTGTTAGGAAACAAGAATGGGTTGGACGAAATGATTCAACTTCTGAATCTTGCCATGTTGTGTACAGATCCATACCCAGATAGTCGCCCTTCAATGACGAAGGTGACGAGTCGAATCGATGAAATATACCATTCGATCTTACTGAAAGAACAAGAGATGAGCAAGGATAAGTTTTATGATGTGGACAGTGCTGTTTCTCAGCAATTTTATTCGGCTGATTCAATCATGGTTCCACCTTCAATCTAG 1875 46.99 MARRNLLRLCLSFSALVVLLFFPAGEADLASDMAALVVLQKAMGARSRTRQWNLSDETPCLWFGVICGGGRVTELRLPGVGLFGQLPLGLGNLTHLETLSLRSNMLSGSIPSDFANLRSLRNIYLQRNSFSSEIPSVLFSIQSLVRLNLAHNQFVGPISSGFNNLTNLEVLNLEGNQFDGFIPDLNIPSLKTLNVSFNRLNGSIPTRLSDQPASVFDGNSLCGKPLSPCQGEEKKLSTAAIVGIVIGGLIAFLIIGLILIFLCRKRIRINRRNDAQMTTRSEVKNGGGGNGGIRNQNGLVFCGKGESVFDLEELLKASAEVLGKGAFGSTYKAALDMGMTMAVKRLRDVKVSEEEFMEKIESLGMMNHQNLVPINAYYYGRDEKLLVCDYAPMGSLSLHLHGNKDSGRTPLKWEARVGIMLSAGRGISYLHSRRPPTSHGNIKPSNILLNRSHTACVSDFGLIQIASPTPTLNHTVAYRAPEVTDLRKVSLKADVYSFGMVILELLTGKTPNSSTLNDDGVDLPRWVKSKVNKKKTAEVFDEELLGNKNGLDEMIQLLNLAMLCTDPYPDSRPSMTKVTSRIDEIYHSILLKEQEMSKDKFYDVDSAVSQQFYSADSIMVPPSI 624
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15899495 15902333 + CmaCh04G022790.1 Cma04g02279 293360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02279 624 SMART LRR_typ_2 117 141 IPR003591 -
Cma04g02279 624 SMART LRR_typ_2 93 116 IPR003591 -
Cma04g02279 624 SMART LRR_typ_2 187 211 IPR003591 -
Cma04g02279 624 SMART LRR_typ_2 165 186 IPR003591 -
Cma04g02279 624 Gene3D Ribonuclease Inhibitor 32 140 IPR032675 -
Cma04g02279 624 ProSiteProfiles Protein kinase domain profile. 316 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g02279 624 Gene3D Transferase(Phosphotransferase) domain 1 392 598 - -
Cma04g02279 624 Gene3D Phosphorylase Kinase; domain 1 294 390 - -
Cma04g02279 624 ProSitePatterns Protein kinases ATP-binding region signature. 322 344 IPR017441 GO:0005524
Cma04g02279 624 Pfam Protein kinase domain 320 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g02279 624 PANTHER OS05G0588300 PROTEIN 11 586 - -
Cma04g02279 624 Pfam Leucine rich repeat N-terminal domain 30 67 IPR013210 -
Cma04g02279 624 Gene3D Ribonuclease Inhibitor 141 229 IPR032675 -
Cma04g02279 624 SUPERFAMILY L domain-like 48 210 - -
Cma04g02279 624 Pfam Leucine Rich Repeat 167 184 IPR001611 GO:0005515
Cma04g02279 624 PANTHER LRR RECEPTOR-LIKE KINASE 11 586 - -
Cma04g02279 624 SUPERFAMILY Protein kinase-like (PK-like) 320 580 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02279 Cma-Chr4:15899495 Cma14g00829 Cma-Chr14:4231658 0 dispersed
Cma15g00759 Cma-Chr15:3708343 Cma04g02279 Cma-Chr4:15899495 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68529 PF00069 Pkinase 1.20E-33 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02279 - - mcha:111012024 926.006