Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02280 ATGGAGAAGAACCAACCTGAGAATCCAGACCTTCTTGAGAAAACCAACGACGATGTCCCCAAATTGCTCGCTGATGATGCCATTGTTGCCGTTCCAGATGCTGTTGCTGGTGAATCCGAAGTAAAATCTGCAGATAAATTGGAGGATGATAAGGATCAGGAGGAGAAGGAGAAGGAGAAGGAGAATGAGACGGAAAAGGAGGAGGAGTTGAAGGAGAAGGATGAGTCTAAGGATGAACTGGAGCTTCATTGTGATCTCCAGACGATTCTTGAAGACGTAGATCAATTTCTGTTAACTTCTCACGGTTCTCGCGACCGAGAGGAGGATTCTGCTGTGGAGATTCCGAAGTTCATCGACAAGTTCATGGATCTCGTGGATGCCAAGATTGAGCAATACGAGAATACAGAATCGAATGCCAAGGAAAGAGAGTACCGAGTGCCGGAGGACGAATCTTCGTTTCTGGAAGCAGTTAATCGGATAGCGAAGCTCAAAAGTGCAATCCACAAAATGAAGTTGGAAGACGAGAAGAATCCGTTGATCAATCGCATCGGGAGCACTCAACAGCGATCATTTTCTTGTTTAGAAGAAGAGTTCAGGTTCTTTCTCGAGGAATCCAGAAATGGCGATTCGGATCCCGAACCGGATCGTTGTGATGATGCTGACTCCGCTCAACTCCTTTTTCCAGGTTACTCCGGCGAGATCGTGAGCTATTTGAACAAAATCGCTAACCAAATGATTGCCGGTGGATTCGAATCGGAATGTTGCCAAGTTTACATCGTAGCAAGAAGAAACATATTCGAAGATGCCTTGCAGAAGTTCGGATTCGAGAAATACAGCATTGATGATATACAGAAGATGAGTTGGGAATCAATGGAGAGGGAGATCGCTATATGGATCAAAACCATCAAGCATTGTGCCACCGTTTTGTTCTCCGGCGAACGGGATCTCGCCGAATCTGTATTTTCAGCGTATCCTCCAATCTCCGCCAGTCTGTTCAGCAATCTAACTCGCGGCATTGTGATTCAACTCCTAAATTTCTCAGAAGGAGTCACAATGACGAAACGCTCCGCCGAGAAATTGTTCAAGATGCTCGACATGTACGAAGCTCTTCGTGATCTGGTCCCAAAAATGGAAGACTTATTTCCAGAAGAATCCGCCAACGAACTCAAAACAGAGTCCACAACCGCTCGAACTCGTCTAGGCGAAGCGGCGATTTGCATATTTTGCGATCTCGAAAACTCGATCAAAGCCGACACGGGACGAACTCCGGTACCAGGCGGCGCCGTTCATCCATTGACTCGATACACCATTAACTACTTGAAATATGCGTGCGAGTACAGAAACACGCTGGAACAGATTTTCAAAGATCACGCAAAGATCGAGCGAGCAGATTCCACAAACCGACCACATTTCGAAGGCGAACAAGCACCGACTTACAACCACCCTAGCAATGACAATCAATCCCCATTCTCGACGGAACTGACGAAGGTAATGGAGCTCCTGGACTCAAATCTGGAAGCGAAATCAAAGCTGTACAGAGACATAGCACTGAGTTCGATTTTCATGATGAACAACGGGCGATACATCTTGCAGAAAATCAAAGGATCTGCAGAGATTCACGAACTGGTAGGCGATGCTTGGTACAGGAAGAGATCTTCGGAGTTACGCCAGTACCACAAGAACTACCAAAGAGAAACATGGGGAAGATTGTTGGGGTGTTTGAACCACGAGGGTTTGATGGTGCACGGGAAAGTGATAAAGCCAGTGCTGAAGGAGAAGTTCAAAGGATTCAACGCCCTGTTCGAAGAGATTCACAAGACGCAAAGCACGTGGGTGATAAGCGACGAGCAGCTTCAATCGGAGCTCCGAGTATCGATATCGGCGGTGATGATTCCGGCGTATAGGTCATTCCTAGCGAGGTTTTCGCAGTACTTGGATCCGGGGAGACAAACGGAGAAATACATTAAGCTACAGCCTGAAGACATAGAAACCTACATAGATGATCTATTCGATGGAAATGCATCCTCCATGGCAAGAAAGAGAACATAA 2049 46.56 MEKNQPENPDLLEKTNDDVPKLLADDAIVAVPDAVAGESEVKSADKLEDDKDQEEKEKEKENETEKEEELKEKDESKDELELHCDLQTILEDVDQFLLTSHGSRDREEDSAVEIPKFIDKFMDLVDAKIEQYENTESNAKEREYRVPEDESSFLEAVNRIAKLKSAIHKMKLEDEKNPLINRIGSTQQRSFSCLEEEFRFFLEESRNGDSDPEPDRCDDADSAQLLFPGYSGEIVSYLNKIANQMIAGGFESECCQVYIVARRNIFEDALQKFGFEKYSIDDIQKMSWESMEREIAIWIKTIKHCATVLFSGERDLAESVFSAYPPISASLFSNLTRGIVIQLLNFSEGVTMTKRSAEKLFKMLDMYEALRDLVPKMEDLFPEESANELKTESTTARTRLGEAAICIFCDLENSIKADTGRTPVPGGAVHPLTRYTINYLKYACEYRNTLEQIFKDHAKIERADSTNRPHFEGEQAPTYNHPSNDNQSPFSTELTKVMELLDSNLEAKSKLYRDIALSSIFMMNNGRYILQKIKGSAEIHELVGDAWYRKRSSELRQYHKNYQRETWGRLLGCLNHEGLMVHGKVIKPVLKEKFKGFNALFEEIHKTQSTWVISDEQLQSELRVSISAVMIPAYRSFLARFSQYLDPGRQTEKYIKLQPEDIETYIDDLFDGNASSMARKRT 682
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15904894 15906942 - CmaCh04G022800.1 Cma04g02280 293361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02280 682 MobiDBLite consensus disorder prediction 32 79 - -
Cma04g02280 682 Gene3D Exocyst complex component Exo70 127 680 - -
Cma04g02280 682 Coils Coil 44 83 - -
Cma04g02280 682 MobiDBLite consensus disorder prediction 39 79 - -
Cma04g02280 682 PANTHER EXOCYST COMPLEX PROTEIN EXO70 68 680 IPR004140 GO:0000145|GO:0006887
Cma04g02280 682 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 68 680 - -
Cma04g02280 682 Coils Coil 122 142 - -
Cma04g02280 682 SUPERFAMILY Cullin repeat-like 147 671 IPR016159 -
Cma04g02280 682 MobiDBLite consensus disorder prediction 471 488 - -
Cma04g02280 682 Pfam Exo70 exocyst complex subunit 298 668 IPR046364 GO:0000145|GO:0005546|GO:0006887
Cma04g02280 682 MobiDBLite consensus disorder prediction 464 488 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02280 Cma-Chr4:15904894 Cma06g01676 Cma-Chr6:10336286 0 dispersed
Cma15g00757 Cma-Chr15:3697182 Cma04g02280 Cma-Chr4:15904894 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02280 K07195 - csv:101206040 1054.28