Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02293 ATGAAGATGAAGAGGGAGCTTGAGGATGATAGATCTACTGGTGGTGGTGTCTACGGCGGCGGAAGGCAGGGGGTTGGGAAAGGGGAGTGTTCTTCAGTGTTGAGTGGGAAAGTGAAGATGTGGGAGGAGGAGGAGCAAGAGGTCGGCGGCGGAATGGATGAGTTGCTTGCTGTTTTGGGCTACAAGGTTAGAGCGTCGGACATGGCGGATGTGGCGCAGAAGATGGAGCAACTGGAGATGGTGATGGGATCTGTTCAGGAAGATGGGATTTCTCATCTGGCTTCTGATACTGTTCATTATAATCCTTCTGATCTCTCTGCCTGGATTCAAAATATGCTCTCTGAATTCAATAATACCCCCAACCATTTCAACTCTTCTTCTACTTCTACTCCTCCTCAATCTTCTCAATATTCCAATCCTCACTCACGGATTCAATCCAGGCCTTCGCGGTTGTACGACGATGATTCTGAGTACGATCTCAGCGCCATTCCTGGCGTAGCGGTTTTTCCTTCCAAAGATTACTCAACAGAATTCGAAACTAATTCTCGCAAGCGAGTGAAGATTGAAGGAGAGAATTCGGTGAATTTGTTGCCGCCATCGCCACCGTTTGTTGCTGCGGCAGCGGCCGGGATTGTCTCTGAACCTTCTCGGCCGGTGGTGGTTGTGGAGGAGGGCTCGCAAGACGCAGGGATTCAACTCGTTCACACTCTAATGGCCTGCGCCGAGGCCGTGCAGCAAGAAAACATGAAGATCGCTGAGGCATTGGTGAAGCACATCGGATTACTAGCGGTATCGCAAGCCGGAGCGATGAGGAAAGTCGCGACGTATTTTGCCGAAGCCCTAGCTCGTCGGATTTACAGAATCTACTCTCCTCAAGACGGATTTTACTCTTCATACTCCGATATCCTCCAGATGCACTTTTACGAGACCTGTCCGTATCTGAAATTCGCGCATTTCACTGCGAATCAAGCGATTCTCGAAGCATTCGCGACGGCGTCGAGAGTTCATGTCATCGATTTCAGTCTCAATCAAGGTATGCAATGGCCGGCGCTGATGCAAGCACTCGCATTACGGCCAGGAGGTCCGCCGACGTTTCGATTGACTGGAATCGGCCCGCCGAAGCAAGGTAATACGGCCGATTCGTTGCAGCAAGTCGGTTGGAAGTTAGCGCAGATGGCGGAGGCCATTGGTGTGGAGTTTGAGTTCAATCATATCGTGTGTAGTAACCTAGCTAATCTCAATCCGGCGGCTCTGGAGATTCGGCTGGCGTCGGTGGAGGCAGTGGCGGTGAATTCGGTGTTCGATCTCCACCGGTTACTGGCTCGGCCTGGAGCGATCGAGAAGGTTTTGGGATCGATAAAAGCAACGAAGCCGAAGATCGTGACGATTGTAGAACAAGAAGCAAACCACAACGGGAGGGTTTTCATGGACCGGTTCACCGAGGCGTTACATTATTACTCAAACATGTTTGACTCGCTCGAGGTTTCCTCGACCGGGTTTGAACCGGCAAGTGAGGACGTGTTGTTGTCTGAAGTTTATTTAGGAAGGCAGATTTGTAATGTAGTGGCTTGTGAAGGATCAGACCGAGTTGAACGGCACGAGTCCTTGACTCAGTGGCGATCCCGGATGAAATCAGCTGGGTTCAACCCGGTTCATCTCGGTTCGAACGCGTTTAAGCAAGCTAGCATGCTTTTGGCCCTCTTTGCTGGAGGAGAGGGGTACAGGGTGGAAGAGAATAATGGGTGTTTGATGCTTGGCTGGCACACTCGACCGTTGATCGCCACGTCAGCTTGGCAGCTCGACGCCGATGAGTCGACCCAGTGA 1824 51.54 MKMKRELEDDRSTGGGVYGGGRQGVGKGECSSVLSGKVKMWEEEEQEVGGGMDELLAVLGYKVRASDMADVAQKMEQLEMVMGSVQEDGISHLASDTVHYNPSDLSAWIQNMLSEFNNTPNHFNSSSTSTPPQSSQYSNPHSRIQSRPSRLYDDDSEYDLSAIPGVAVFPSKDYSTEFETNSRKRVKIEGENSVNLLPPSPPFVAAAAAGIVSEPSRPVVVVEEGSQDAGIQLVHTLMACAEAVQQENMKIAEALVKHIGLLAVSQAGAMRKVATYFAEALARRIYRIYSPQDGFYSSYSDILQMHFYETCPYLKFAHFTANQAILEAFATASRVHVIDFSLNQGMQWPALMQALALRPGGPPTFRLTGIGPPKQGNTADSLQQVGWKLAQMAEAIGVEFEFNHIVCSNLANLNPAALEIRLASVEAVAVNSVFDLHRLLARPGAIEKVLGSIKATKPKIVTIVEQEANHNGRVFMDRFTEALHYYSNMFDSLEVSSTGFEPASEDVLLSEVYLGRQICNVVACEGSDRVERHESLTQWRSRMKSAGFNPVHLGSNAFKQASMLLALFAGGEGYRVEENNGCLMLGWHTRPLIATSAWQLDADESTQ 607
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15997493 15999316 + CmaCh04G022930.1 Cma04g02293 293374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02293 607 Pfam Transcriptional regulator DELLA protein N terminal 53 120 IPR021914 -
Cma04g02293 607 MobiDBLite consensus disorder prediction 119 155 - -
Cma04g02293 607 ProSiteProfiles GRAS family profile. 224 599 IPR005202 -
Cma04g02293 607 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 32 600 IPR005202 -
Cma04g02293 607 PANTHER DELLA PROTEIN GAI1-RELATED 32 600 IPR030006 GO:0003712|GO:0005634
Cma04g02293 607 MobiDBLite consensus disorder prediction 119 146 - -
Cma04g02293 607 SMART DELLA_2 53 126 - -
Cma04g02293 607 Pfam GRAS domain family 233 599 IPR005202 -
Cma04g02293 607 Gene3D - 51 116 IPR038088 -
Cma04g02293 607 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02293 Cma-Chr4:15997493 Cma15g00959 Cma-Chr15:5172627 0 dispersed
Cma11g00057 Cma-Chr11:287929 Cma04g02293 Cma-Chr4:15997493 4.59E-66 dispersed
Cma04g02984 Cma-Chr4:19554944 Cma04g02293 Cma-Chr4:15997493 7.33E-105 transposed
Cma15g00743 Cma-Chr15:3614862 Cma04g02293 Cma-Chr4:15997493 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34948 PF03514 GRAS 1.10E-135 CL0063 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02293 K14494 - csv:101213911 928.702