Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma04g02297 | ATGGCACTTGCAAACTCATCTGTACATGAAGCCGATGGCATGGACAAAGCTGGTGGATATATCAAGTCTTTACCCATTGCTACCCATGACACTCCAAATGCTACCTTTCTCTTCCGAAACACCACGAATTACCAACTCGATCACCATCAGCAGCAGCAGCAGCAACTGCCTCAGTCTCTCATCAACTTCAAGTGTGGGATTGACAATATCTTCCATAAGAACAATGAATCTTTGCTGAGCTTTGAGCCACAAGGGGTTTGTCAAGACACTTACAATTGGGATGATCACCAGCGTTTGATGGAAGATCCCAATTGCTTTCAAACAGCTACCAATGGTTATAGCTCTCCAAAAGAGAACAAAAATGGTGACGGGTCTGTGTATGATTGGCTTTACTCTGAAGCAACTGGTGTTTCTGATGGCATTCAGGAAGCTGAAGGAGCTCACGAGATTGCCAATCAAAAGCGACCTCATATGGGAGAGAGCAGTGGGAGTGTTAGTAAGAAGCAATGCACAGCAGCTGCAGCTAAGAAGCAGAAACCCAAATCATCAACAGCGAAGGATCCACAGAGCATTGCAGCCAAGAATCGACGAGAGAGGATTAGCGAGCGGCTGAAGATACTTCAAGAATTGGTTCCCAATGGCTCCAAGGTTGATTTGGTAACAATGTTGGAAAAGGCAATTAGTTATGTAAAATTTCTTCAACTACAAGTGAAGATCCTAGCTACAGATGAGTTTTGGCCAGTTCAAGGTGGGAAAGCTCCTGATATATCCCAAGTTAAGGAAGCCATTGATGCTATTCTTTCATCTCAAAGAGAAAGAAGTTCAAGCTCAAACAGTCAAAAGTGA | 846 | 43.74 | MALANSSVHEADGMDKAGGYIKSLPIATHDTPNATFLFRNTTNYQLDHHQQQQQQLPQSLINFKCGIDNIFHKNNESLLSFEPQGVCQDTYNWDDHQRLMEDPNCFQTATNGYSSPKENKNGDGSVYDWLYSEATGVSDGIQEAEGAHEIANQKRPHMGESSGSVSKKQCTAAAAKKQKPKSSTAKDPQSIAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKILATDEFWPVQGGKAPDISQVKEAIDAILSSQRERSSSSNSQK | 281 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 16014445 | 16016872 | - | CmaCh04G022970.1 | Cma04g02297 | 293378 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma04g02297 | 281 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 28 | 270 | - | - | |
| Cma04g02297 | 281 | MobiDBLite | consensus disorder prediction | 154 | 197 | - | - | |
| Cma04g02297 | 281 | MobiDBLite | consensus disorder prediction | 157 | 171 | - | - | |
| Cma04g02297 | 281 | CDD | bHLH_AtIND_like | 185 | 247 | - | - | |
| Cma04g02297 | 281 | Gene3D | - | 177 | 241 | IPR036638 | GO:0046983 | |
| Cma04g02297 | 281 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 28 | 270 | - | - | |
| Cma04g02297 | 281 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 184 | 233 | IPR011598 | GO:0046983 | |
| Cma04g02297 | 281 | Pfam | Helix-loop-helix DNA-binding domain | 191 | 234 | IPR011598 | GO:0046983 | |
| Cma04g02297 | 281 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 182 | 243 | IPR036638 | GO:0046983 | |
| Cma04g02297 | 281 | SMART | finulus | 190 | 239 | IPR011598 | GO:0046983 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma04g00451 | Cma-Chr4:2305604 | Cma04g02297 | Cma-Chr4:16014445 | 9.45E-26 | dispersed | |
| Cma04g02297 | Cma-Chr4:16014445 | Cma09g00285 | Cma-Chr9:1167219 | 1.17E-25 | dispersed | |
| Cma15g00740 | Cma-Chr15:3601573 | Cma04g02297 | Cma-Chr4:16014445 | 6.93E-56 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 34949 | PF00010 | HLH | 8.80E-08 | No_clan | Cma | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma04g02297 | - | - | bhj:120092869 | 368.622 |