Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02308 ATGACCGGAAGCGGCGGAAGAGAGGAGAACGGAATCCGCCGGGCGGATTCCAATGAGGAGGAGTATCAGGTGGAGAGCGTTCGTGATCGGATTTCATCGTCGCGAGGGAGTCGATTTAATCTGATTCAGAAACAGTTGAGACTTGAGCCGACTCGCAGACGATTTAGCCGCGAAAATCTCATCAATGGCATTAAATGCCTCGTTATTCTCCCTGACAGCAGATGGTATAGGGCGTGGACGAAGTTCATACTGATATGGGCAATCTATTCCTCCTTCTTCACACCCATGGAATTTGGATTCTTCAGGGGATTACCAGAGAATCTATTTATACTCGACATTGTTGGGCAGCTTGCTTTCCTCCTTGACATTGTTTTCCAGTTCTTCGTTGCCTACAGAGACAGCCAGACATACCGAATGGTCTATAAGCGCACTCCAATAGCCCTCAAGTACTTGAAATCCACTTTTGTCACTGATTTGCTTAGCTGTATGCCCTGGGATATCATTTATAAGGCTTGTGGGAAGAGAGAGGAGGTGAGATATCTCCTATGGATTAGGCTATTCCGAGTGCGAAAAGTCACAGATTTTTTTCAGACGTTGGAGAAGGATATACGTATTAATTATATGTTTGCTAGAATTTTCAAGCTCCTTGTTGTTGAACTTTACTGCACACATACTGCGGCTTGCATCTTTTACTATTTGGCAACTACCCTTCCTGCTTCTCAAGAAGGGTACACATGGATTGGAAGCTTGAAATTGGGAGACTACAGTTACTCACATTTCAGAGATATTGATTTATGGAAACGCTACACCACCTCTTTATATTTTGCTATTGTCACCATGGCTACTGTTGGTTACGGAGATATACATGCAGTCAACTTGAGGGAAATGATATTCATAATGATTTATGTGTCATTTGACATGGTTCTCGGTGCTTACTTGATTGGTAACATGACTGCATTGATTGTAAAAGGATCCAAGACGGTGAAATTCAGAGATAAAATGACAGATGTAATGAAATACATGAACAGGAATAGACTTAGCAGGGAAATCCGTGATCAGATTAAAGGTCACTTACGTTTACAGTATGAAAGTAGTTACACTGAGGCTACTGTTCTACAGGAAATCCCAATATCAATCCGTGCCAAGATTTCCCAAACATTATACTTGCCTTATGTTCAGAATGTTTCTCTCTTTAGAGGGTGTTCTCCAGAATTCATCAATCAAATAGTTATTAAACTCCATGAAGAGTTTTTTCTCCCTGGAGAGGTGATAATGGAGCAAGGAAATGTGGTAGATCAACTTTATTTTGTCTGTCATGGTGCGCTGGAGGAATTGGGCATTGGACAAGATGGTTCAGAAGAGACCATATCTTTACTGCAACCCAACAGCTCTTTTGGAGAGATTTCAATTCTTTGCAATATTCCTCAACCTTATACAGTTCGAGTGTGTGAATTGTGTAGGCTCTTGCGCCTTGATAAGCAGTCCTTTACAAATATCCTTGACATATACTTTTACGACGGGAGGAAAATCTTGAACAACCTTCTAGAGGGAAAGGAATCAAACCTTCGAGTTAAGCAATTGGAATCTGATATCTCATTTCATATTGGAAAACAAGAAGCTGAACTTGCTCTCAAGGTGAACAGTGCAGCATATCATGGAGATCTATACCAATTAAAAGGTCTCCTTCGAGCTGGAGCTGATCCAAACAAGACAGATTATGATGGAAGATCGCCATTGCATCTTGCAGCATCCAGAGGATTCGAGGATATAGTTGGTTTCCTAATACAGGAAGGAGTAAACATTGACCTTAAAGATAACTTTGGAAATACTCCATTAATGGAAGCCATCAAGAACGGAAATGATCAAGTTGCTGTTTTGCTTTCTAAACAAGGAGCTTCATTGAAGGTTGAAAATGCTGGTAGCTTCCTCTGTACAGCAGTTTCAAGGGGCGATTCAGATCTTCTCAAGAGATTATTGTGCTATGGCATTGACCCCAACTCAAAAGACTACGATTTTCGAACACCATTACATATAGCTGCTTCAGAAGGGCTGCATTTGATGGCAAAGTTGCTTTTAGAATCAGGGGCTAGTGTTTTCTCAAAGGACAGATGGGGAAACACCCCGCTTGATGAAGGCCGGATTTGTGGAAACAAGAACTTGCTCAAGCTCTTGGAAGAGGCAGAAGCTACTCAGTTGTCAGAAACCCCTTATTCCTCTCGAGAATTCCCAGTAAAAAAACACACAAAGAAGTGTACAGTGTTCCCCTTCCACCCGTGGAATCGTGAAGAAAACAAGAGACCTGGAATAGTGCTATGGGTTCCACTCACTATGGAAGAGCTGATCGAAGTAGCATCAGATCAGCTACAAATTTCAGACAAATGTTGTATATTATCAGAAGATGGAGGTAAAATTCATGATGTTCATATGATTGATGAATGCCAAAAGCTCTATCTTGTTCCTGAAACTCATTAG 2472 41.38 MTGSGGREENGIRRADSNEEEYQVESVRDRISSSRGSRFNLIQKQLRLEPTRRRFSRENLINGIKCLVILPDSRWYRAWTKFILIWAIYSSFFTPMEFGFFRGLPENLFILDIVGQLAFLLDIVFQFFVAYRDSQTYRMVYKRTPIALKYLKSTFVTDLLSCMPWDIIYKACGKREEVRYLLWIRLFRVRKVTDFFQTLEKDIRINYMFARIFKLLVVELYCTHTAACIFYYLATTLPASQEGYTWIGSLKLGDYSYSHFRDIDLWKRYTTSLYFAIVTMATVGYGDIHAVNLREMIFIMIYVSFDMVLGAYLIGNMTALIVKGSKTVKFRDKMTDVMKYMNRNRLSREIRDQIKGHLRLQYESSYTEATVLQEIPISIRAKISQTLYLPYVQNVSLFRGCSPEFINQIVIKLHEEFFLPGEVIMEQGNVVDQLYFVCHGALEELGIGQDGSEETISLLQPNSSFGEISILCNIPQPYTVRVCELCRLLRLDKQSFTNILDIYFYDGRKILNNLLEGKESNLRVKQLESDISFHIGKQEAELALKVNSAAYHGDLYQLKGLLRAGADPNKTDYDGRSPLHLAASRGFEDIVGFLIQEGVNIDLKDNFGNTPLMEAIKNGNDQVAVLLSKQGASLKVENAGSFLCTAVSRGDSDLLKRLLCYGIDPNSKDYDFRTPLHIAASEGLHLMAKLLLESGASVFSKDRWGNTPLDEGRICGNKNLLKLLEEAEATQLSETPYSSREFPVKKHTKKCTVFPFHPWNREENKRPGIVLWVPLTMEELIEVASDQLQISDKCCILSEDGGKIHDVHMIDECQKLYLVPETH 823
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16068494 16075821 + CmaCh04G023080.1 Cma04g02308 293389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02308 823 PRINTS Ankyrin repeat signature 575 590 IPR002110 GO:0005515
Cma04g02308 823 PRINTS Ankyrin repeat signature 687 701 IPR002110 GO:0005515
Cma04g02308 823 PANTHER POTASSIUM CHANNEL AKT1 8 822 IPR045319 GO:0005249|GO:0006813
Cma04g02308 823 SMART ANK_2a 541 570 IPR002110 GO:0005515
Cma04g02308 823 SMART ANK_2a 638 667 IPR002110 GO:0005515
Cma04g02308 823 SMART ANK_2a 704 733 IPR002110 GO:0005515
Cma04g02308 823 SMART ANK_2a 607 636 IPR002110 GO:0005515
Cma04g02308 823 SMART ANK_2a 671 700 IPR002110 GO:0005515
Cma04g02308 823 SMART ANK_2a 574 603 IPR002110 GO:0005515
Cma04g02308 823 Pfam Ion transport protein 77 322 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cma04g02308 823 SUPERFAMILY Ankyrin repeat 546 726 IPR036770 -
Cma04g02308 823 ProSiteProfiles Ankyrin repeat region circular profile. 574 606 - -
Cma04g02308 823 CDD CAP_ED 397 511 IPR000595 -
Cma04g02308 823 ProSiteProfiles Ankyrin repeat region circular profile. 607 638 - -
Cma04g02308 823 ProSiteProfiles Ankyrin repeat profile. 574 606 IPR002110 GO:0005515
Cma04g02308 823 MobiDBLite consensus disorder prediction 9 25 - -
Cma04g02308 823 ProSiteProfiles KHA domain profile. 750 823 IPR021789 -
Cma04g02308 823 MobiDBLite consensus disorder prediction 1 25 - -
Cma04g02308 823 ProSiteProfiles cAMP/cGMP binding motif profile. 397 517 IPR000595 -
Cma04g02308 823 Gene3D - 78 323 - -
Cma04g02308 823 SUPERFAMILY Voltage-gated potassium channels 71 322 - -
Cma04g02308 823 PANTHER POTASSIUM CHANNEL SKOR-LIKE 8 822 - -
Cma04g02308 823 Pfam KHA, dimerisation domain of potassium ion channel 749 818 IPR021789 -
Cma04g02308 823 Pfam Cyclic nucleotide-binding domain 417 501 IPR000595 -
Cma04g02308 823 Gene3D - 523 639 IPR036770 -
Cma04g02308 823 Gene3D Helix hairpin bin 324 380 - -
Cma04g02308 823 ProSiteProfiles Ankyrin repeat profile. 671 703 IPR002110 GO:0005515
Cma04g02308 823 SUPERFAMILY cAMP-binding domain-like 325 515 IPR018490 -
Cma04g02308 823 SMART cnmp_10 397 515 IPR000595 -
Cma04g02308 823 Gene3D - 640 734 IPR036770 -
Cma04g02308 823 PRINTS EAG/ELK/ERG potassium channel family signature 112 122 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma04g02308 823 PRINTS EAG/ELK/ERG potassium channel family signature 221 231 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma04g02308 823 PRINTS EAG/ELK/ERG potassium channel family signature 269 286 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma04g02308 823 PRINTS EAG/ELK/ERG potassium channel family signature 313 322 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma04g02308 823 Pfam Ankyrin repeats (3 copies) 549 636 IPR002110 GO:0005515
Cma04g02308 823 Pfam Ankyrin repeats (3 copies) 644 724 IPR002110 GO:0005515
Cma04g02308 823 Gene3D Jelly Rolls 381 520 IPR014710 -
Cma04g02308 823 ProSiteProfiles Ankyrin repeat profile. 607 639 IPR002110 GO:0005515
Cma04g02308 823 ProSiteProfiles Ankyrin repeat region circular profile. 671 703 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02308 Cma-Chr4:16068494 Cma11g00553 Cma-Chr11:2667971 1.32E-127 dispersed
Cma06g00914 Cma-Chr6:6011252 Cma04g02308 Cma-Chr4:16068494 0 transposed
Cma15g00732 Cma-Chr15:3549694 Cma04g02308 Cma-Chr4:16068494 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02308 K21867 - csv:101210912 1500.34