Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02315 ATGGGTTCTTTGCCTTCTGACACTCTCGCCGTCGAAATGACCGACACCCATGTTCTCGCCGGCGCCGGCGACAGAGCAGAGACCACCGAATGGCTCCTCAATTCTCCCAACCCTCCAAGTTTCTGGGAAGAACTTGCCGCCGCCGTCAGAGAAAGTGTCATTCCACGAAGCTGCACAAAGACCCATTTGGCAAAGAAGAAGATGAAAACCACTTCTTCAAGCGATGAAAAACAGAGCATTTTTAAAGCCACTCTGACCCTTTTGCAGAGCATGTTCCCAATCCTCAAATTGGGCCGAAACTACAAAGCTTCTAACTTCAAAAGCGACATCATGGCTGGTTTAACTCTCGCTAGTCTCAGCATTCCTCAGAGTATTGGGTATGCGAATTTGGCTAAGCTTGATCCTCAGTTCGGTCTCTATACAAGCGCTGTTCCTCCTTTGATCTATGCTCTAATGGGGAGCTCGAGAGAGATAGCCATTGGCCCAGTGGCTGTGGTTTCGCTGCTTCTTTCGTCTATGTTGCAAGAGATTCGAGATCCTGTTGCAGACCCAGTTGGTTATAGAAGCCTTGTTTTTACTGTCACCTTATTTGCAGGGATTTTCCAAGCAGGATTTGGACTTCTGAGATTGGGGTTTCTTGTGGATTTTCTTTCTCATGCTGCCATTGTTGGGTTCATGGCTGGAGCTGCCATTCTCATTGGTCTTCAGCAATTGAAAGGCTTGCTTGCTATTAGCAACTTCACGACCAAAACCGATGTGGTCTCTGTTTTGGAATCTGTCGTGAGATCTGCTCACCAGCCTTGGTACCCTTTGAACATTGTTCTTGGCTGCTCGTTTCTGATCTTTCTCCTTGTGGCCAGGTTTATTGGTAGAAGGAAAAGGAAGCTGTTTTGGGTGTCAGCCATTGCTCCTCTCATATCAGTTATTCTCTCCACTTTGATAGTGTTTGTGTCAAGAGCTGATAGACATGGAGTTAAGATAGTTAAGGATGTAAAAGAAGGGTTGAACCCAATCTCTGTTCATCAGCTGCAATTCAACAGCTCAACTGTTGGCTTAGCTGCCAAATCTGGCCTCATTGCTGCCATCATAGCTCTCACAGAAGCAATGGCTGTTGGCCGATCCTTCGCCTCCATTAAAGGCTACAACATTGATGGGAACAGGGAGATGATTGCTATGGGCTTCATGAACATTATAGGCTCTCTAACCTCTTGCTATGTAGCTACTGGGTCATTCTCAAGAACGGCTGTGAATTTTAGTGCTGGGTGTGAGAGTGTATTGTCAAATATAGTGATGGCAATAACAGTGATGCTGGCATTGCAATTCTTCACAAGGCTCCTCTACTTCACTCCAATGGCCATTTTGGCTTCCATCATTCTCTCTGCTCTCCCTGGTCTTATTGACATCAATGAAGCTCTGCGCATCTGGAAGCTCGACAAGCTTGACTTTCTTGCCTGTCTTGGCGCTTTCCTCGGTGTCTTGTTTCATTCCGTGGAATTTGGCCTTCTTCTTGCGGTCGGAATTTCATTTGCGAAGATATTGTTGATATCGATAAGACCCGCTATAGAAGAGGTGAGAAGGCTTGGAAGAAGTGACATGTTTGGCAACATGAAGCAATTCCCAATGGCCATGAAAACTCAAGGAATCTCCATTGTTAGAATAAACTGTAGCTTGCTTTGTTTTGCCAATGCCAGCTTCATCAAAGACAGAATAATGAGATTGGTTGAAGAAGATGATGAAGATGATGATATTGAAGAAACAACCAAAGATCAACCGAAACAAGTAGTTGTTGACATGTGTAATGTTATGAATATCGACACGTCGGGGATTATTGTTCTAGAGGAACTTCACAAGAGGTTGTTATTGAACGGGATACAGGTAACAATAGCAAGTCCAAAATGGGAAGTGATTCACAAACTTAAAAGAACCAATTTTGTTGAAAGAATTGAAGGAAGGGTTTTCCTATCAGTGGGTGAAGCTGTGGATTCATGTCTTCAAAATGCTTCCAAATTGCCTTCTCCTACCAAAGTGCTTGTCACTTGA 2040 44.46 MGSLPSDTLAVEMTDTHVLAGAGDRAETTEWLLNSPNPPSFWEELAAAVRESVIPRSCTKTHLAKKKMKTTSSSDEKQSIFKATLTLLQSMFPILKLGRNYKASNFKSDIMAGLTLASLSIPQSIGYANLAKLDPQFGLYTSAVPPLIYALMGSSREIAIGPVAVVSLLLSSMLQEIRDPVADPVGYRSLVFTVTLFAGIFQAGFGLLRLGFLVDFLSHAAIVGFMAGAAILIGLQQLKGLLAISNFTTKTDVVSVLESVVRSAHQPWYPLNIVLGCSFLIFLLVARFIGRRKRKLFWVSAIAPLISVILSTLIVFVSRADRHGVKIVKDVKEGLNPISVHQLQFNSSTVGLAAKSGLIAAIIALTEAMAVGRSFASIKGYNIDGNREMIAMGFMNIIGSLTSCYVATGSFSRTAVNFSAGCESVLSNIVMAITVMLALQFFTRLLYFTPMAILASIILSALPGLIDINEALRIWKLDKLDFLACLGAFLGVLFHSVEFGLLLAVGISFAKILLISIRPAIEEVRRLGRSDMFGNMKQFPMAMKTQGISIVRINCSLLCFANASFIKDRIMRLVEEDDEDDDIEETTKDQPKQVVVDMCNVMNIDTSGIIVLEELHKRLLLNGIQVTIASPKWEVIHKLKRTNFVERIEGRVFLSVGEAVDSCLQNASKLPSPTKVLVT 679
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16105844 16111813 - CmaCh04G023150.1 Cma04g02315 293396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02315 679 Pfam Sulfate permease family 106 486 IPR011547 GO:0016021
Cma04g02315 679 SUPERFAMILY SpoIIaa-like 544 663 IPR036513 -
Cma04g02315 679 PANTHER SULFATE TRANSPORTER 2.2 26 667 IPR030315 GO:0008272|GO:0015116
Cma04g02315 679 PANTHER SULFATE TRANSPORTER 26 667 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cma04g02315 679 Pfam STAS domain 542 659 IPR002645 -
Cma04g02315 679 CDD STAS_SulP_like_sulfate_transporter 539 654 - -
Cma04g02315 679 ProSitePatterns SLC26A transporters signature. 135 156 IPR018045 GO:0008271|GO:0008272
Cma04g02315 679 ProSiteProfiles STAS domain profile. 558 663 IPR002645 -
Cma04g02315 679 TIGRFAM sulP: sulfate permease 93 656 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cma04g02315 679 Gene3D STAS domain 534 669 IPR036513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02315 Cma-Chr4:16105844 Cma19g00268 Cma-Chr19:1918558 0 dispersed
Cma16g00681 Cma-Chr16:3543086 Cma04g02315 Cma-Chr4:16105844 0 transposed
Cma01g01419 Cma-Chr1:10010272 Cma04g02315 Cma-Chr4:16105844 0 wgd
Cma15g00724 Cma-Chr15:3515599 Cma04g02315 Cma-Chr4:16105844 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02315 K17469 - csv:101211892 1077.39