Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02328 ATGCATCGTCTGCCTCAGTTTCTCTCTCCTGGGAAACGAAAAAAAGCTATGGATTCGAGAAAAAACGCAGGTAAACCCAAGCTTGGCCGACTTAATGCGGCGAAGAACATCGATTATGACGCTCCTTCCTCGTCTTCTTCGCTCGAAGATTCTTCTGGATCTCTTTACACTCGGTCCATGGACACGCCGGATGCCTCCAGCTTTCGGATTCAAGGGATCGACGGTGAAATTGATTTCATCTGTCGGACTTTAGGGCTAAACGGTCCCGAAGACTTTGGGATTCCGATGGAGGCTTGGGAGGCTAGAAAGCTTCGTTCATCTTCCGAGCTTCTACCGAAGTCGAGATTGCATCCTATGGATAGCCCGAAGAGCGAGGAAGTTAGTATGGAGAAGGAAGATAAAGAAATCGAAGATGAATTGTGCCTTAGGGTTAAGGATTCAGTTCGAATTAGCGTTGAGCAATCGACGGCTAAGACCGAATCTCTCGAGTGGAATGAAAGCCGTATGGCTACTACTGTTGAATGTAGCCCGAGAAGTGGAATCAATGGTGCTCGGCCTCCCTTACTCAAGCCGCCGCCGCCTATGGATGTCGATAATACTTGGGACATTTTGAAAACCTTTGCTCCTTTAGTTGACGAAGTAAATCGCGATGAAGTTCAAAAAGGAATCGAACCTTTTGTCGAAGGAGAAGGAGAGGGAAATATTGTCGGGCCTGTGGAGAATTCACCGCTCGTTCGGTCTTGGTGTTCTTTCACAACCTCGAATGATGATGACTGTTCGAGCTGCACTACAGAGCCTGCAAATATTTCACCCAATATGAGATGTAAACCCATCATCACGACTTGGGTAAAAGGAAAACGTCTAGGGAGCGGTTCATTTGGATCTGTGTATGAAGCAATGTCACAGAGTGGGGCCTTCTTTGCAGTCAAGGAAGTATCACTGCTCGATGAAGATAGTCAGGGAAGACAAAGTATCTATCAACTTCAGCAGGAGATAGCTCTTCTAAGTGAGTTCGAGCACGAGAACATAGTTCAGTACTATGGCACCGACACGGAGCCGGATGGGTCAAAACTCTATATCTTCCTTGAGCTTGTATCTCAGGGCTCCCTTATGAGCCTATATCAGAGGGTTGTCCTTACGGATTCCATTGTTTCCGCCTATACAAGGCAGATTCTGTGTGGTTTAAAGTATCTTCATGAGCAAAATGTGGTTCACAGGGATATTAAATGTGCTAATATATTGGTGGATGTGAGTGGATCTGTGAAGCTTGCAGATTTTGGTTTGGCGAAGGCAACAAAATTGAACGACGTTAAATCTTGTAAGGGAACTCCGTTCTGGATGGCACCTGAGGTGGTTAATAGGAAGGGCCAGGGCTACGGTCTTCCAGCTGATATCTGGAGCCTTGGGTGCACAGTATTGGAAATGTTAACCCAGAAGCTTCCGTACTCGGAATTCGAAAATCATATGCAGGCCCTATATCAGATTGGAAAAGGCAGACTACCGGCGATTCCCGACTCTCTCTCAGACGATGGGCGGGATTTCATTCTGCAGTGCCTTAAAGTTAATCCAAACGATCGTCTTACTGCAGCTGATCTTTTAAATCACCCGTTTGTTAAAAGACCAGCTTCCAGTTCATCAGGGTCAGCATCTCCTTACTACAGGCCAGGCAGAAGAATTTGA 1680 46.43 MHRLPQFLSPGKRKKAMDSRKNAGKPKLGRLNAAKNIDYDAPSSSSSLEDSSGSLYTRSMDTPDASSFRIQGIDGEIDFICRTLGLNGPEDFGIPMEAWEARKLRSSSELLPKSRLHPMDSPKSEEVSMEKEDKEIEDELCLRVKDSVRISVEQSTAKTESLEWNESRMATTVECSPRSGINGARPPLLKPPPPMDVDNTWDILKTFAPLVDEVNRDEVQKGIEPFVEGEGEGNIVGPVENSPLVRSWCSFTTSNDDDCSSCTTEPANISPNMRCKPIITTWVKGKRLGSGSFGSVYEAMSQSGAFFAVKEVSLLDEDSQGRQSIYQLQQEIALLSEFEHENIVQYYGTDTEPDGSKLYIFLELVSQGSLMSLYQRVVLTDSIVSAYTRQILCGLKYLHEQNVVHRDIKCANILVDVSGSVKLADFGLAKATKLNDVKSCKGTPFWMAPEVVNRKGQGYGLPADIWSLGCTVLEMLTQKLPYSEFENHMQALYQIGKGRLPAIPDSLSDDGRDFILQCLKVNPNDRLTAADLLNHPFVKRPASSSSGSASPYYRPGRRI 559
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16197407 16202326 + CmaCh04G023280.1 Cma04g02328 293409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02328 559 MobiDBLite consensus disorder prediction 110 133 - -
Cma04g02328 559 ProSitePatterns Serine/Threonine protein kinases active-site signature. 403 415 IPR008271 GO:0004672|GO:0006468
Cma04g02328 559 MobiDBLite consensus disorder prediction 168 194 - -
Cma04g02328 559 SMART serkin_6 282 538 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g02328 559 ProSitePatterns Protein kinases ATP-binding region signature. 288 310 IPR017441 GO:0005524
Cma04g02328 559 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 176 550 - -
Cma04g02328 559 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 19 163 - -
Cma04g02328 559 SUPERFAMILY Protein kinase-like (PK-like) 281 541 IPR011009 -
Cma04g02328 559 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 176 550 - -
Cma04g02328 559 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 19 163 - -
Cma04g02328 559 MobiDBLite consensus disorder prediction 38 64 - -
Cma04g02328 559 ProSiteProfiles Protein kinase domain profile. 282 538 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g02328 559 Pfam Protein kinase domain 283 538 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g02328 559 Gene3D Transferase(Phosphotransferase) domain 1 274 552 - -
Cma04g02328 559 MobiDBLite consensus disorder prediction 1 64 - -
Cma04g02328 559 MobiDBLite consensus disorder prediction 540 559 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02328 Cma-Chr4:16197407 Cma18g01256 Cma-Chr18:9793275 8.16E-80 dispersed
Cma04g02339 Cma-Chr4:16256450 Cma04g02328 Cma-Chr4:16197407 6.66E-22 dispersed
Cma15g00713 Cma-Chr15:3435856 Cma04g02328 Cma-Chr4:16197407 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68532 PF00069 Pkinase 5.10E-68 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02328 K13414 - csv:101218538 862.833