Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02340 ATGGCATCTGCCATGGCTAAACCCAAAACACAGAGAAAGCTTACCAGACAGAGCCATGAAAACCAGAAACCAAAGGCGCAGAAGGCAGAGAAGCCGCCGTCTTGGGCAGTTGTTAGAGGCATATTCAGCTGTAAGTACCTGCAGCCTCAACAACAACAACAGAATCAATTGCCACGCAAAGAGAAACAAACGGAGCAAGCAACAGAAGAGAGTAGCAAGAACTGTAAGAAAATGAGGTGTTCGGGTTCACTTTGTAGCAACACTAAGGTAACACACAGGCTTGAAGTAGCAGCATCACCGGATGCTCACAAGAAAAGGGCATTGGGTTCTTCAATGGGTTCTAAAAACAATGAGTCCTTAAGTAAAAGTAGATCCACGAAAGCTCCTCCTTTGAACGAACAAAATGGTGTTCTATCGGCCACAACTTCATCGTTATCTGCATCATCTTCTTCCAATTCCTCCAATGGTGCCTCTTTCAGGGGAATGCCATTCAGGAGATTCTATGGCTGTTATGAATGTAAAATGGTGATTGACCCTGTTCTTGGGATAACTAGAGATCCTTCTCTTAGAGCAACTATTTTCCCTTGTCCTGAATGTGGGGAGATTTTCATGAAAGCTGAAACTTTAGAGCTTCACCAGAGTGTTAGACATGCAGTATCTGAACTTGGTCCTGAAGACACAAGCAAGAACATAGTGGAAATCATATTCCAGTCGAGCTGGCTAAAAAAGCAAGCCCCAATTTGCAAAATTGAAAGGATTCTCAAAGTCCAGAACACTGCAAAGACCATCTCGAAATTCGAGGAATACAGAGACTCCATTAAAGCCAAAGCCATAAAGCTTTCAAAGAAGCATCCACGATGCATAGCAGATGGCAACGAACTCTTAAGGTTCCACTGCACCACCTTGGCCTGCTCATTGGGCCTTAATGGCTCCTCCAACCTCTGCAGTTCAATACCACAATGCAATGTCTGTAGCATTATCAAGAATGGGTTCAAGGTGGCGGCAGAGGCCACTGGAGGGGACGCTGGAAAGGGGATTCTAACAACAGCAACAAGTGGAAAGGCTCATGACAGTGCCGGAATATCATCGGACGGCAATGACAAAAGGGCAATGCTGGTTTGCCGAGTAATAGCTGGTAGGGTGAAGAAAAGTTCAGAAGGCACTATGGAGGATTATGACTCATTGGCCGGAGCAGCAGGCATGTATTCCAATTTGGATGAGTTATACGTGTTCAGTCCCAAGGCAATATTGCCCTGTTTTGTTGTCATTTATGGAGGGTTTTAA 1284 44.94 MASAMAKPKTQRKLTRQSHENQKPKAQKAEKPPSWAVVRGIFSCKYLQPQQQQQNQLPRKEKQTEQATEESSKNCKKMRCSGSLCSNTKVTHRLEVAASPDAHKKRALGSSMGSKNNESLSKSRSTKAPPLNEQNGVLSATTSSLSASSSSNSSNGASFRGMPFRRFYGCYECKMVIDPVLGITRDPSLRATIFPCPECGEIFMKAETLELHQSVRHAVSELGPEDTSKNIVEIIFQSSWLKKQAPICKIERILKVQNTAKTISKFEEYRDSIKAKAIKLSKKHPRCIADGNELLRFHCTTLACSLGLNGSSNLCSSIPQCNVCSIIKNGFKVAAEATGGDAGKGILTTATSGKAHDSAGISSDGNDKRAMLVCRVIAGRVKKSSEGTMEDYDSLAGAAGMYSNLDELYVFSPKAILPCFVVIYGGF 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16266503 16268341 + CmaCh04G023400.1 Cma04g02340 293421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02340 427 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 34 424 - -
Cma04g02340 427 Gene3D - 218 425 - -
Cma04g02340 427 MobiDBLite consensus disorder prediction 110 157 - -
Cma04g02340 427 ProSitePatterns Zinc finger C2H2 type domain signature. 196 217 IPR013087 -
Cma04g02340 427 MobiDBLite consensus disorder prediction 13 27 - -
Cma04g02340 427 SUPERFAMILY ADP-ribosylation 219 425 - -
Cma04g02340 427 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 34 424 - -
Cma04g02340 427 ProSiteProfiles Zinc finger C2H2 type domain profile. 194 222 IPR013087 -
Cma04g02340 427 Coils Coil 50 70 - -
Cma04g02340 427 MobiDBLite consensus disorder prediction 48 73 - -
Cma04g02340 427 MobiDBLite consensus disorder prediction 96 157 - -
Cma04g02340 427 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01969 Cma-Chr1:12700578 Cma04g02340 Cma-Chr4:16266503 1.74E-105 dispersed
Cma02g00755 Cma-Chr2:4569350 Cma04g02340 Cma-Chr4:16266503 5.70E-64 dispersed
Cma02g01549 Cma-Chr2:8798459 Cma04g02340 Cma-Chr4:16266503 8.72E-35 dispersed
Cma04g02340 Cma-Chr4:16266503 Cma09g00108 Cma-Chr9:472478 1.00E-109 dispersed
Cma15g01142 Cma-Chr15:7267499 Cma04g02340 Cma-Chr4:16266503 4.62E-35 dispersed
Cma15g00699 Cma-Chr15:3342709 Cma04g02340 Cma-Chr4:16266503 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34950 None None None None Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02340 - - bhj:120067077 727.243