Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02354 ATGATGGGTATGAATTCTAACATTATGAGTAAGTTGAAGCCTTATATTCTAGTGGTGTGCTTACAATTTGGAATGGCTGGCATATATGTGATATCTATGGCTACTCTTAACCACGGCATGAGTCGCTATGTTTTGATCGTCTACCGAAACGTTGTCGCTGCTCTCTTCCTCGCTCCCTTTGCACTAATCTTTGAAAGGAAAACAAGGCCAAAGATGACACTCCCGGTTGCTATGCAAATCATGGTCTTGGGATTTCTTGAACCGGTTCTCGATCAGGGGTTCGGTTATTTGGGGATGTCGTACACGTCAGCGTCGTTTACTTCGGCTATCATGAACGCTGTGCCGTCTATTACCTTCATCATTGCTGTGGTTTTTCGAATGGAGCGAGTCAATTTGAAACGAGTGCGAGGGGTTGCTAAGGTCATTGGAACTTTGGTGACCTTCGCCGGAGCTTTGGTTATGACGCTTTACAAAGGCCCAATAGTGGATTTCTTTTGGACTCGGAAAACCAACCACCTTGTTCATAGCGCCTCCGCCGCTTCCGCCGCCGCCAATCAGCACTGGGTGGCAGGAACTCTGTTCATCCTTCTGGCTTGTGTGGCTTGGTCTTGTTTCTATGTGTTACAGTCTGTGACAGTGAAGAGATACCCAGCGGAGCTATCACTTTCGACATTGATATGCATGGCTGGTGTGGTTCAAACCACAGTGATAGCAGTGGCCTTCGAGCATCGTGCTAGCTCATGGGCGGTGGGCTGGGACTCCAGGCTTCTGGCTCCTCTCTATACGGGAATAGTTGGGTCAGGAATTACATATTACTTCCAAGCTCTTGTAATGAAGACTAGAGGCCCTGTATTTGTGACGGCTTTCAACCCTTTGTGTATGGTTGTTGTCACTATCATCTCCTCCATTATTCTCGCCGAGAAGATCCATCTTGGAAGCGTTATTGGAGCCATTATCATAGCAATTGGGCTTTATTCGGTTGTTTGGGGCAAAAGCAAGGATTATTCCACCGCCGCTGGCCACCTTGAAAAGTCTAACGCCGCCGTGCCGGAGCTCCCAATTACTGCCTCTAAACTCCCCGCCGAACAAGATGCTAATGAACTTCATTAA 1110 47.75 MMGMNSNIMSKLKPYILVVCLQFGMAGIYVISMATLNHGMSRYVLIVYRNVVAALFLAPFALIFERKTRPKMTLPVAMQIMVLGFLEPVLDQGFGYLGMSYTSASFTSAIMNAVPSITFIIAVVFRMERVNLKRVRGVAKVIGTLVTFAGALVMTLYKGPIVDFFWTRKTNHLVHSASAASAAANQHWVAGTLFILLACVAWSCFYVLQSVTVKRYPAELSLSTLICMAGVVQTTVIAVAFEHRASSWAVGWDSRLLAPLYTGIVGSGITYYFQALVMKTRGPVFVTAFNPLCMVVVTIISSIILAEKIHLGSVIGAIIIAIGLYSVVWGKSKDYSTAAGHLEKSNAAVPELPITASKLPAEQDANELH 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16332522 16335952 + CmaCh04G023540.1 Cma04g02354 293435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02354 369 SUPERFAMILY Multidrug resistance efflux transporter EmrE 48 157 - -
Cma04g02354 369 PANTHER WAT1-RELATED PROTEIN 12 346 IPR030184 GO:0016021|GO:0022857
Cma04g02354 369 PANTHER WAT1-RELATED PROTEIN 12 346 - -
Cma04g02354 369 SUPERFAMILY Multidrug resistance efflux transporter EmrE 253 332 - -
Cma04g02354 369 Pfam EamA-like transporter family 191 328 IPR000620 GO:0016020|GO:0016021
Cma04g02354 369 Pfam EamA-like transporter family 14 154 IPR000620 GO:0016020|GO:0016021
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01391 Cma-Chr1:9854965 Cma04g02354 Cma-Chr4:16332522 9.49E-131 dispersed
Cma04g02354 Cma-Chr4:16332522 Cma14g00498 Cma-Chr14:2435324 3.49E-123 dispersed
Cma04g02354 Cma-Chr4:16332522 Cma09g00799 Cma-Chr9:3899192 2.06E-142 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02354 - - csv:101217521 590.882