Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02357 ATGGCAGCTCGAGCGCTGTATAGCGCTCACAGAGCTTTAAATTTGTTCTTGTTTATTGTTTTAGCCTCATTTTTGTTCAATATAGCTTTCATTAGCGCTAAATCAACCATAGAGCCATGTTCGAACGCCGATTCTTGCAATGCCCTTCTCGGCTACACTCTTTACACCGATCTTAAGGTTTCTGAGGTTGCTTCGCTGTTTCAAGTCGACCCCATTTCGATTCTCACCGCCAATGCTATAGATGTTTCATACCCAGATGTTGAAAATCACATTCTGCCTTCGAAGCTCTTCATTAAAATCCCCATTTCTTGTTCTTGCGTTGATGGGATTCGTAAATCGGTTTCGACACGCTACAAGACTCGCCCATCTGATACTCTTTTGTCGATTGCTGATACTATCTATGCTGGTTTGGTCTCGTCGGATCAGATTCGTGAGGCGAATTCGATATCAGATCCCTCTGTTCTTGATGTTGGACAGACACTTGTTGTGCCACTTCCTTGTACTTGTTTTAATGGGACAGACAATTCTTTGCCTGCTATTTACTTGTCTTACGTTGTTCAACTTGAAGATACTTTGACAGGGATTGCGTTTAGATATTCGACCACTATTACTGATTTGATGAATGTTAATGCTATGGGAAACCCGAGTATTAAGGCTGGTGACATCTTGGCCGTCCCCTTGCCAGCCTGTGCATCTAAGTTTCCAAGATATTCCTCCGACTTCGGCTTGATCGTGCCAAACGGAAGCTATGCGATTACCGCAAGCCATTGCGTGCAATGTAGCTGCGGGCCGGGGAATCGCAATCTGTACTGCATGCCTGCTCCCTTTGCCGTTTCTTGTTCAAGTATGCAATGCAGAAACAGCAATCTAATGCTTGGGAACTACACTGCTCAGCAGAGTAGTGCAGGTTGCAATGTTACATCTTGTAGTTATGGTGGTTTTGTAAATGGCACCCTATTGACGACGTTGTCTTCGAATCTTCAGCCTCGATGCCCAGGGCCACAGCAATTTCCCCCGCTTAAAGCCCCACCTACTACAGTAATCAGAGATTCAAATTTTGCACCTGTACCTGCTCCTCAATCTGATGGCACTGGATCACCTGCACCCAGATCAGGATTGATCCCTTCATCAATTGGATCTCTCCCCGGACTCCCGCCAGCCAGTGGCCCCGTTGGTACCGGGTTTAGTTCGCCGTCTTCCAGTTCTTCCTCGTCGTTGGCGAATCCGTTAGGTAGTATCCTTGCTGCCTTGATGTTATTTATCTTATTTACATCACTTGATAGAACGAATAATGAACAGGAAAATGAACCCCAAACAATATCTTACATTTGTTGA 1335 45.24 MAARALYSAHRALNLFLFIVLASFLFNIAFISAKSTIEPCSNADSCNALLGYTLYTDLKVSEVASLFQVDPISILTANAIDVSYPDVENHILPSKLFIKIPISCSCVDGIRKSVSTRYKTRPSDTLLSIADTIYAGLVSSDQIREANSISDPSVLDVGQTLVVPLPCTCFNGTDNSLPAIYLSYVVQLEDTLTGIAFRYSTTITDLMNVNAMGNPSIKAGDILAVPLPACASKFPRYSSDFGLIVPNGSYAITASHCVQCSCGPGNRNLYCMPAPFAVSCSSMQCRNSNLMLGNYTAQQSSAGCNVTSCSYGGFVNGTLLTTLSSNLQPRCPGPQQFPPLKAPPTTVIRDSNFAPVPAPQSDGTGSPAPRSGLIPSSIGSLPGLPPASGPVGTGFSSPSSSSSSSLANPLGSILAALMLFILFTSLDRTNNEQENEPQTISYIC 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16348290 16352214 - CmaCh04G023570.1 Cma04g02357 293438

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02357 444 Gene3D LysM domain 173 233 IPR036779 -
Cma04g02357 444 ProSiteProfiles LysM domain profile. 116 163 IPR018392 -
Cma04g02357 444 SUPERFAMILY LysM domain 116 165 IPR036779 -
Cma04g02357 444 ProSiteProfiles LysM domain profile. 182 225 IPR018392 -
Cma04g02357 444 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 16 426 - -
Cma04g02357 444 SMART LysM_2 117 164 IPR018392 -
Cma04g02357 444 SMART LysM_2 183 226 IPR018392 -
Cma04g02357 444 Gene3D LysM domain 112 172 IPR036779 -
Cma04g02357 444 MobiDBLite consensus disorder prediction 331 402 - -
Cma04g02357 444 Pfam LysM domain 118 164 IPR018392 -
Cma04g02357 444 Pfam LysM domain 184 226 IPR018392 -
Cma04g02357 444 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 3 16 426 - -
Cma04g02357 444 CDD LysM 116 163 IPR018392 -
Cma04g02357 444 SUPERFAMILY LysM domain 182 227 IPR036779 -
Cma04g02357 444 CDD LysM 183 225 IPR018392 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02357 - - - csv:101216338 706.057
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02357 Cma-Chr4:16348290 Cma07g00748 Cma-Chr7:3322708 3.16E-09 dispersed
Cma11g01342 Cma-Chr11:8892255 Cma04g02357 Cma-Chr4:16348290 4.17E-34 transposed
Cma15g00683 Cma-Chr15:3270430 Cma04g02357 Cma-Chr4:16348290 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma04g02357 . 15 392 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 74.7 1.4e-159 560.1
Cma15g00683 . 71 451 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 72.2 1.7e-154 543.1
Cma04g02357 . 15 355 LysM Receptor-like Protein (LYPs) Gene Family AT1G77630 69.5 5.7e-137 485.0
Cma15g00683 . 71 410 LysM Receptor-like Protein (LYPs) Gene Family AT1G77630 69.4 1.4e-135 480.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007180 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 1 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g02357 Cma_Chr04 FPKM 7.972639 8.495915 2.757176 2.768084 22.953106 23.244019 23.527637 1.712106 2.16246 2.011519