Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma04g02368 | ATGGAGTTGAAAGCAGCAGATGTAGCGGAAGTTCAACAAATACAGCAACATTTCCATGTGTTGGCAGTCGATGATAGCCTTATAGACAGAAAACTTTTGGAAAAGCTCCTAAGAATTTCTTCATGCGAAGCAGTGACCTGCGTGGAGTCTGGAGACAAAGCTCTTAGATACCTGGGTCTGCTTGATGACCTTGACAAATTTTCTTCTTCTGCTGCTTCATTTTCTTCACCAAAACTCTCTCACCAACAGGAAGTCAAAGTCAACTTAATCATGACAGACTACTGTATGCCTGGGATGACTGGTTATGATCTACTCAAACGACTCAAGGGATCTTCTTGGAAAGATATTCCTGTTGTTGTCATGTCATCGGAGAACGAACCATCAAGAATCCACATGTGCTTAGAAGAAGGAGCAGAGGAATTCCTTTTGAAGCCTCTTCAACTATCAGACGTGAAGAAGCTCGAGCCTCACCTTCAGAGGTCCCTCAGCCGTTCATCTGCTGAAGTAAAGGAAGAAGAAACCGTCGAAATCAGAAACGAAATCGGAATCACTAATTCCGACGCCATTGACAACGAAAACAGCACGAAAGAAGAAAATAACAAGAACGACAATAACAATACTTTCAGCAAGAGAAAAGCCGCGAATCCAGAGCCATCTGAAAGACGACCAAAACTGAAAGAACTGCAAGCTGCAGTATAA | 699 | 42.78 | MELKAADVAEVQQIQQHFHVLAVDDSLIDRKLLEKLLRISSCEAVTCVESGDKALRYLGLLDDLDKFSSSAASFSSPKLSHQQEVKVNLIMTDYCMPGMTGYDLLKRLKGSSWKDIPVVVMSSENEPSRIHMCLEEGAEEFLLKPLQLSDVKKLEPHLQRSLSRSSAEVKEEETVEIRNEIGITNSDAIDNENSTKEENNKNDNNNTFSKRKAANPEPSERRPKLKELQAAV | 232 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 16414033 | 16416557 | + | CmaCh04G023680.1 | Cma04g02368 | 293449 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma04g02368 | 232 | SMART | REC_2 | 18 | 155 | IPR001789 | GO:0000160 | |
| Cma04g02368 | 232 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR ORR4 | 10 | 229 | - | - | |
| Cma04g02368 | 232 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 10 | 229 | IPR045279 | GO:0009736 | |
| Cma04g02368 | 232 | MobiDBLite | consensus disorder prediction | 191 | 205 | - | - | |
| Cma04g02368 | 232 | MobiDBLite | consensus disorder prediction | 214 | 232 | - | - | |
| Cma04g02368 | 232 | Pfam | Response regulator receiver domain | 20 | 152 | IPR001789 | GO:0000160 | |
| Cma04g02368 | 232 | SUPERFAMILY | CheY-like | 18 | 164 | IPR011006 | - | |
| Cma04g02368 | 232 | Gene3D | - | 19 | 229 | - | - | |
| Cma04g02368 | 232 | ProSiteProfiles | Response regulatory domain profile. | 19 | 159 | IPR001789 | GO:0000160 | |
| Cma04g02368 | 232 | MobiDBLite | consensus disorder prediction | 184 | 232 | - | - | |
| Cma04g02368 | 232 | CDD | REC_typeA_ARR | 20 | 154 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma04g02368 | Cma-Chr4:16414033 | Cma15g00834 | Cma-Chr15:4217333 | 6.31E-57 | dispersed | |
| Cma15g00671 | Cma-Chr15:3205820 | Cma04g02368 | Cma-Chr4:16414033 | 7.72E-110 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 34953 | PF00072 | Response_reg | 3.80E-18 | CL0304 | Cma | TR |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma04g02368 | K14492 | - | csv:101216267 | 273.863 |