Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma04g02374 | ATGTCGGAAGTAATTACTGTCATTGATATCGACGACGACAATGACAACAACGAAGCTGAAAAGCGAGTCAAGTGCAGCAATGTCGCTAGTCCTGCCGCCGTACCTGACGGCAAAGCGATACCCTGGGTCGAGAAGTTTCGGCCAAAGTCTCTTGCCGATGTTGCTGCTCACCGCGACATTGTTGACACCATTGACAAGCTGACCAGTGAGAATAGGCTGCCACATCTCCTGTTGTACGGCCCTCCTGGCACTGGGAAGACATCAACCATTCTAGCAGTTGCCCGCAAGCTTTATGGAGCAAACTACCACAAGATGATACTCGAGCTGAACGCATCAGATGATAGAGGGATAGATGTTGTCCGACAGCAGATTCAGAATTTTGTCAGTACTCAAAGCTTTTCATTTGGGGTTAAACCATCTGTAAAATTGGTACTTCTGGACGAGGCAGATGCCATGACTAAAGATGCACAGTTTGCTTTACGTAGAGTAGTTGAGAAATATACAAAAGGTACAAGGTTTACTCTTATCTGTAATCACGTAAATAAGATTATTCCCGCTTTACAATCAAGATGTACCCGCTTCCGATTTGCTCCCCTCGACAACTTTCATGTCACTGAACGACTCAGATATGTTATTGAGGCTGAGAGGTTGGACGTCTCTGAGAGTGGCTTAGCAGCCCTTGTTCGACTTTGTGGTGGTGATATGAGAAAGGCTTTAAATATTATGCAGTCAACGCATATGGCTTCTCAGCATATTACTGACGAGGCTGTATACATATGTACAGGAAATCCAATGCCCAAAGACATAGAACAAATATCATTTTGGCTGCTGAATGAACCATTTTCTGACAGTTTTAAGAGAATATCTGAAATAAAGACCAGAAAAGGATTAGCTTTGGTTGATATAGTGAGAGAAGTCACCATGTTTGTTTTTAAGATCAAGATGCCATCGGATGTAAGAGTTCAATTGATTAATGATCTTGCTGACATAGAGTACAGAATGAGTTTTGGATGCAACGACAAGTTACAACTCGGATTGCTCATCTCATCGTTTACTAAAGCCAGATGTGCACTCGTTAGCGCTGCAGAGTAG | 1092 | 43.13 | MSEVITVIDIDDDNDNNEAEKRVKCSNVASPAAVPDGKAIPWVEKFRPKSLADVAAHRDIVDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGANYHKMILELNASDDRGIDVVRQQIQNFVSTQSFSFGVKPSVKLVLLDEADAMTKDAQFALRRVVEKYTKGTRFTLICNHVNKIIPALQSRCTRFRFAPLDNFHVTERLRYVIEAERLDVSESGLAALVRLCGGDMRKALNIMQSTHMASQHITDEAVYICTGNPMPKDIEQISFWLLNEPFSDSFKRISEIKTRKGLALVDIVREVTMFVFKIKMPSDVRVQLINDLADIEYRMSFGCNDKLQLGLLISSFTKARCALVSAAE | 363 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 16440418 | 16446642 | + | CmaCh04G023740.1 | Cma04g02374 | 293455 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma04g02374 | 363 | Gene3D | - | 264 | 360 | - | - | |
Cma04g02374 | 363 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 40 | 257 | IPR027417 | - | |
Cma04g02374 | 363 | Gene3D | - | 202 | 263 | - | - | |
Cma04g02374 | 363 | CDD | AAA | 60 | 198 | - | - | |
Cma04g02374 | 363 | SUPERFAMILY | post-AAA+ oligomerization domain-like | 264 | 354 | IPR008921 | GO:0003677|GO:0006260 | |
Cma04g02374 | 363 | Gene3D | - | 36 | 198 | IPR027417 | - | |
Cma04g02374 | 363 | PANTHER | REPLICATION FACTOR C SUBUNIT 5 | 37 | 358 | - | - | |
Cma04g02374 | 363 | SMART | AAA_5 | 72 | 202 | IPR003593 | - | |
Cma04g02374 | 363 | CDD | HLD_clamp_RFC | 203 | 261 | - | - | |
Cma04g02374 | 363 | Pfam | Replication factor C C-terminal domain | 264 | 349 | IPR013748 | - | |
Cma04g02374 | 363 | Pfam | ATPase family associated with various cellular activities (AAA) | 76 | 196 | IPR003959 | GO:0005524|GO:0016887 | |
Cma04g02374 | 363 | PANTHER | REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT | 37 | 358 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma04g02374 | Cma-Chr4:16440418 | Cma16g01020 | Cma-Chr16:7853491 | 9.16E-64 | dispersed | |
Cma06g01257 | Cma-Chr6:8356533 | Cma04g02374 | Cma-Chr4:16440418 | 3.46E-10 | dispersed | |
Cma15g00666 | Cma-Chr15:3169342 | Cma04g02374 | Cma-Chr4:16440418 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma04g02374 | K10756 | - | csv:101217230 | 641.728 |