Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02374 ATGTCGGAAGTAATTACTGTCATTGATATCGACGACGACAATGACAACAACGAAGCTGAAAAGCGAGTCAAGTGCAGCAATGTCGCTAGTCCTGCCGCCGTACCTGACGGCAAAGCGATACCCTGGGTCGAGAAGTTTCGGCCAAAGTCTCTTGCCGATGTTGCTGCTCACCGCGACATTGTTGACACCATTGACAAGCTGACCAGTGAGAATAGGCTGCCACATCTCCTGTTGTACGGCCCTCCTGGCACTGGGAAGACATCAACCATTCTAGCAGTTGCCCGCAAGCTTTATGGAGCAAACTACCACAAGATGATACTCGAGCTGAACGCATCAGATGATAGAGGGATAGATGTTGTCCGACAGCAGATTCAGAATTTTGTCAGTACTCAAAGCTTTTCATTTGGGGTTAAACCATCTGTAAAATTGGTACTTCTGGACGAGGCAGATGCCATGACTAAAGATGCACAGTTTGCTTTACGTAGAGTAGTTGAGAAATATACAAAAGGTACAAGGTTTACTCTTATCTGTAATCACGTAAATAAGATTATTCCCGCTTTACAATCAAGATGTACCCGCTTCCGATTTGCTCCCCTCGACAACTTTCATGTCACTGAACGACTCAGATATGTTATTGAGGCTGAGAGGTTGGACGTCTCTGAGAGTGGCTTAGCAGCCCTTGTTCGACTTTGTGGTGGTGATATGAGAAAGGCTTTAAATATTATGCAGTCAACGCATATGGCTTCTCAGCATATTACTGACGAGGCTGTATACATATGTACAGGAAATCCAATGCCCAAAGACATAGAACAAATATCATTTTGGCTGCTGAATGAACCATTTTCTGACAGTTTTAAGAGAATATCTGAAATAAAGACCAGAAAAGGATTAGCTTTGGTTGATATAGTGAGAGAAGTCACCATGTTTGTTTTTAAGATCAAGATGCCATCGGATGTAAGAGTTCAATTGATTAATGATCTTGCTGACATAGAGTACAGAATGAGTTTTGGATGCAACGACAAGTTACAACTCGGATTGCTCATCTCATCGTTTACTAAAGCCAGATGTGCACTCGTTAGCGCTGCAGAGTAG 1092 43.13 MSEVITVIDIDDDNDNNEAEKRVKCSNVASPAAVPDGKAIPWVEKFRPKSLADVAAHRDIVDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGANYHKMILELNASDDRGIDVVRQQIQNFVSTQSFSFGVKPSVKLVLLDEADAMTKDAQFALRRVVEKYTKGTRFTLICNHVNKIIPALQSRCTRFRFAPLDNFHVTERLRYVIEAERLDVSESGLAALVRLCGGDMRKALNIMQSTHMASQHITDEAVYICTGNPMPKDIEQISFWLLNEPFSDSFKRISEIKTRKGLALVDIVREVTMFVFKIKMPSDVRVQLINDLADIEYRMSFGCNDKLQLGLLISSFTKARCALVSAAE 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16440418 16446642 + CmaCh04G023740.1 Cma04g02374 293455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02374 363 Gene3D - 264 360 - -
Cma04g02374 363 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 40 257 IPR027417 -
Cma04g02374 363 Gene3D - 202 263 - -
Cma04g02374 363 CDD AAA 60 198 - -
Cma04g02374 363 SUPERFAMILY post-AAA+ oligomerization domain-like 264 354 IPR008921 GO:0003677|GO:0006260
Cma04g02374 363 Gene3D - 36 198 IPR027417 -
Cma04g02374 363 PANTHER REPLICATION FACTOR C SUBUNIT 5 37 358 - -
Cma04g02374 363 SMART AAA_5 72 202 IPR003593 -
Cma04g02374 363 CDD HLD_clamp_RFC 203 261 - -
Cma04g02374 363 Pfam Replication factor C C-terminal domain 264 349 IPR013748 -
Cma04g02374 363 Pfam ATPase family associated with various cellular activities (AAA) 76 196 IPR003959 GO:0005524|GO:0016887
Cma04g02374 363 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 37 358 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02374 Cma-Chr4:16440418 Cma16g01020 Cma-Chr16:7853491 9.16E-64 dispersed
Cma06g01257 Cma-Chr6:8356533 Cma04g02374 Cma-Chr4:16440418 3.46E-10 dispersed
Cma15g00666 Cma-Chr15:3169342 Cma04g02374 Cma-Chr4:16440418 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02374 K10756 - csv:101217230 641.728