Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02382 ATGGCAAGTAGTCAGCAGAAAGAATCACAGATGAGTATAGTGGCGACACCGTCCTTTGGCAGCGGCAGCAATCGCATAGCGGCGGTTAACACGGCGAAGATAACTACGATTCCGGCAGATGCCGTGAAGCCACAAAATCACCGTGAAGTACCAACCACCACCGATCAGAAACCTGGATGGAGAAAGTTTCTTTCACACGTTGGCCCTGGTTTCCTCGTGTCATTGGCTTACCTTGATCCTGGCAACTTGGAAACCGACTTGCAGGCTGGAGCTAATCACGGATTCGAGCTTTTGTGGGTGGTGCTCATCGGATTAATATTTGCGCTCATAATTCAATCCCTCGCTGCAAATCTTGGCGTAAGTACCGGAAAACACCTTTCAGAAGTGTGTAGAGCCGAATATCCAAAGCTTGTGAAGTACTGCCTTTGGCTGCTGGCTGAAGTCGCTGTAATAGCCGCCGATATTCCAGAAGTGATAGGAACGGCCTTTGCCCTGAATATTCTATTCCATATTCCTGTTTGGGCTGGAGTTCTTCTCACCGGTTTAAGCACCCTCTTGCTCATAGGGCTCCAGAGATATGGGGTGAGGAAGCTGGAATTGCTGATAGCAATTTTGGTGTTTGTAATGGCGGCGTGTTTCTTCGGGGAAATGAGCTACGTTAAGCCGCCGGCGACCGGGGTTTTGAAAGGAATGTTTGTGCCGAAACTGAACGGGCAAGGTGCCACCGGCGACGCCATTGCCCTCCTCGGCGCTCTGGTTATGCCGCACAATCTGTTTCTTCATTCGGCTCTCGTGCTGTCGAGGAAAGTGCCAAATTCTGTCCGTGGTATCAACGATGCGTGCCGGTATTTCCTAATAGAGAGCGGTTTCGCATTGTTCATATCCTTTTTAATAAACATGGCCGTCGTTTCAGTTTCCGGCACCGTCTGTACGGTCGGCCATGTCTCTGAATCCACCGCCGATCAGTGCTCCGACATAACCCTCAACTCCGCCTCCTTCCTCCTCCAGAATGTGTTGGGAAAATCAAGCTCCACTATTTACGCCATAGCGTTGCTTGCCTCCGGACAGAGCTCCAGCATCACCGGCACTTACGCCGGACAGTTCATCATGCAGGGATTTTTGGACCTGAAAATGAAAACATGGATGAGGAACCTTATGACGAGATCCATTGCCATTACGCCCAGTCTCATTGTCGCCATTATCGGTGGACCTCAAGGAGCTGGACGTCTTATCATCATCGCATCGATGATCCTTTCCTTCGAGCTTCCATTCGCTCTAATTCCGCTCCTCAAATTCAGCAGCAGCACCACCAAGATGGGCCCCCACAAGAATTCCATATACATCATTGTAATCTCATGGATATTGGGTCTATCAATCATCGGCATCAATATCTATTATCTCAGTACGGCCTTCGTGGGCTGGCTTATCGACAACAATTTACCCAAAGTTGCTAATGTATTCATTGGGATCGTTGTATTTCCATTGATGGCCGTTTATATTCTTGCTGTTATTTACTTAACGTTCCGAAAGGATAGGGTTGTGACTTACATTGAGCCCCAAAAGCCCGACCCGATGGCCCAAGCCCATTTGGAAAGTGGGCTGCATAATTCATTTGGGCCTGGTGACGTCGCCCCGGTTCCTTTTAGAGACGATTTGGCCCATATTCCACTTCCAGAGTAA 1680 49.23 MASSQQKESQMSIVATPSFGSGSNRIAAVNTAKITTIPADAVKPQNHREVPTTTDQKPGWRKFLSHVGPGFLVSLAYLDPGNLETDLQAGANHGFELLWVVLIGLIFALIIQSLAANLGVSTGKHLSEVCRAEYPKLVKYCLWLLAEVAVIAADIPEVIGTAFALNILFHIPVWAGVLLTGLSTLLLIGLQRYGVRKLELLIAILVFVMAACFFGEMSYVKPPATGVLKGMFVPKLNGQGATGDAIALLGALVMPHNLFLHSALVLSRKVPNSVRGINDACRYFLIESGFALFISFLINMAVVSVSGTVCTVGHVSESTADQCSDITLNSASFLLQNVLGKSSSTIYAIALLASGQSSSITGTYAGQFIMQGFLDLKMKTWMRNLMTRSIAITPSLIVAIIGGPQGAGRLIIIASMILSFELPFALIPLLKFSSSTTKMGPHKNSIYIIVISWILGLSIIGINIYYLSTAFVGWLIDNNLPKVANVFIGIVVFPLMAVYILAVIYLTFRKDRVVTYIEPQKPDPMAQAHLESGLHNSFGPGDVAPVPFRDDLAHIPLPE 559
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16477866 16481262 - CmaCh04G023820.1 Cma04g02382 293463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02382 559 Hamap Divalent metal cation transporter MntH [mntH]. 46 471 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cma04g02382 559 PANTHER METAL TRANSPORTER NRAMP5 53 559 - -
Cma04g02382 559 PRINTS Natural resistance-associated macrophage protein signature 142 168 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cma04g02382 559 PRINTS Natural resistance-associated macrophage protein signature 170 189 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cma04g02382 559 PRINTS Natural resistance-associated macrophage protein signature 195 216 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cma04g02382 559 PRINTS Natural resistance-associated macrophage protein signature 245 268 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cma04g02382 559 PRINTS Natural resistance-associated macrophage protein signature 355 374 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cma04g02382 559 PRINTS Natural resistance-associated macrophage protein signature 383 400 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cma04g02382 559 PRINTS Natural resistance-associated macrophage protein signature 415 434 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cma04g02382 559 Pfam Natural resistance-associated macrophage protein 84 445 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cma04g02382 559 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 53 559 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cma04g02382 559 TIGRFAM nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 61 437 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00184 Cma-Chr1:808703 Cma04g02382 Cma-Chr4:16477866 0 dispersed
Cma04g02382 Cma-Chr4:16477866 Cma20g00979 Cma-Chr20:5105933 7.55E-109 dispersed
Cma04g02382 Cma-Chr4:16477866 Cma14g01056 Cma-Chr14:5585112 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02382 K21398 - csv:101219356 947.962