Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02383 ATGCCTGCCCATAATCGCCGCTCGTCGTTTTCGTCGTCGACGTCCTCGTCGTTGGCTAAACGACAAGCGTCCTTGGCTTCGTCGACCAACAATGTCGGAAAAGTTATGGTGGTTCCGCCGCATTTGGCGAAGAAACGAGCTCCACTTGGTAACTTAACGAATCTTAAGAATGCGTCTCATAGTGCTGCGAAAAGCTCTGTTCCGCCCCCTGTTATGGTACCCTGTGCAACCAAAGCTGTCAAGACCAGAAAGGCACCGACATTGCTTGATGTCAAAACGACCAGTGTAGTTGTCCCTAGCAATGTCACAACTTTATCAAGAACTGATGCCACTGCTATCTCAAGTAGTATGGCTGTCTCTCCGACTAAATCAGATGGAGCTTCAGTTTCCATGGATGAAACTATGTCTACTTGTGATTCTTTCAAGAGTCCCGACGTCGAGTACGTGGACAATAACGACGTCCCAGCAATAGATTCTGTTGAGAGGAAAACTAAAAGCAGTCTCTGCATTTCAGGTCACGTACCAATTAAAGGTAGCATATGCAACAGAGATGTACCAGCAGAAATGGAAACAGATGGCCGCATCATTGATGTTGATACTGATTTCATGGATCCCCAACAATGTGCTACAATTGCTTGTGATATCTACAATCACTTGCGAGCATCTGAGAAAAGGCCTTCGACGGATTTCATAGAAAAAGTTCAGAAGGATATAAATTCAAATATGCGAGCCATACTGATTGATTGGCTCGTGGAGGTAGCAGAAGAGTACAGGCTTGTGCCAGATACTCTATACTTGACTGTGAATTACATCGATCGATACCTATCGGGAAATTCGATGGATCGACAACGGTTACAGCTGCTTGGTGTTGCTTGCATGATGATTGCTTCAAAATATGAAGAGATCTGTGCACCTCAAGTGGAAGAGTTTTGTTACATAACTGATAACACATACTTCAAAGAAGAGGTTTTGCAAATGGAATCATCTGTCTTGAATTACTTGAAGTTTGAAATGACAGCTCCAACACCCAAATGTTTTTTAAGACGATTTGTTCGTGTTGCTCGAGGCGTCGATGAGGTTTCATCAATGCAGTTGGAGTGCTTGTCGAACTTCATCGCTGAATTGTCTCTTTTAGAATACAATATGCTCTGCTACGCCCCGTCGCTCATAGCTGCCTCGGCGGTTTTCTTGGCAAACCATCCGATCTCGTCGACTGTGTTAAGGATTTGCATCGCCTCTGCTGTAACAGCCATAGTTCAAGCTTACCAGCAATCAGAGAGAAATACAGCCAGCATAAGTACTGCCCTCCGACAATACCGACCGAGTTTTTCCAGAATCGAACCCAGTAGAGACAGTGAAAACGTGGAAGGCCTAGAAGAACTTGCCGCCGGCCGTGAAGACTATTCTGTGGCCGCCGTGGGAATTGCCGCCGACGGCGGAAGGAATTTCTGCGATTTCATAAATGAGCTTTTTGAGGCCGTTTATGTTGTATTCTACGCTGCGATGGATGACGTGCTCGAGTTGGGGTTTTCCAAGATGGCCTGGATTTGA 1551 45.65 MPAHNRRSSFSSSTSSSLAKRQASLASSTNNVGKVMVVPPHLAKKRAPLGNLTNLKNASHSAAKSSVPPPVMVPCATKAVKTRKAPTLLDVKTTSVVVPSNVTTLSRTDATAISSSMAVSPTKSDGASVSMDETMSTCDSFKSPDVEYVDNNDVPAIDSVERKTKSSLCISGHVPIKGSICNRDVPAEMETDGRIIDVDTDFMDPQQCATIACDIYNHLRASEKRPSTDFIEKVQKDINSNMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNSMDRQRLQLLGVACMMIASKYEEICAPQVEEFCYITDNTYFKEEVLQMESSVLNYLKFEMTAPTPKCFLRRFVRVARGVDEVSSMQLECLSNFIAELSLLEYNMLCYAPSLIAASAVFLANHPISSTVLRICIASAVTAIVQAYQQSERNTASISTALRQYRPSFSRIEPSRDSENVEGLEELAAGREDYSVAAVGIAADGGRNFCDFINELFEAVYVVFYAAMDDVLELGFSKMAWI 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16485617 16490386 + CmaCh04G023830.1 Cma04g02383 293464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02383 516 SMART Cyclin_C_2 341 449 IPR004367 -
Cma04g02383 516 CDD CYCLIN 339 398 IPR013763 -
Cma04g02383 516 Pfam Cyclin, C-terminal domain 341 402 IPR004367 -
Cma04g02383 516 SMART cyclin_7 345 431 IPR013763 -
Cma04g02383 516 SMART cyclin_7 248 332 IPR013763 -
Cma04g02383 516 Gene3D - 226 339 - -
Cma04g02383 516 ProSitePatterns Cyclins signature. 243 274 IPR006671 -
Cma04g02383 516 SUPERFAMILY Cyclin-like 204 338 IPR036915 -
Cma04g02383 516 Pfam Cyclin, N-terminal domain 214 338 IPR006671 -
Cma04g02383 516 CDD CYCLIN 242 331 IPR013763 -
Cma04g02383 516 MobiDBLite consensus disorder prediction 1 27 - -
Cma04g02383 516 Gene3D - 214 404 - -
Cma04g02383 516 PANTHER CYCLIN-A1-1 75 405 - -
Cma04g02383 516 PANTHER CYCLINS 75 405 IPR039361 -
Cma04g02383 516 SUPERFAMILY Cyclin-like 319 409 IPR036915 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02383 Cma-Chr4:16485617 Cma17g00828 Cma-Chr17:6501508 2.26E-84 dispersed
Cma15g00658 Cma-Chr15:3138809 Cma04g02383 Cma-Chr4:16485617 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02383 K06627 - csv:101221569 659.833