Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02400 ATGGTGATGAACATCAAACCCATCATGGCATTCATGGTGATGATGATGAAGATAGGCATATTATCAACAGCCTTGGCCGTGGAAGCATCTGAAGCCTTACCCGGGTGCGACGAATGGTGTGGCAAGGTGCACATTCCATATCCATTCGGCATCAAAAAAGGGTGCTATCTCAATCAAAATTTCTCGATTACTTGCCACAAAACCGATCTTAACGGACCTCCAAAGGCAGAGGCGTTTCTGATGCATACCAATATTAGAGTTATGAATATATCTACTAACGGTGAGCTTCACGTATTGCGGCCGATAGTCCGAAATTGTTACAGCTACGGAGATAATTATTTAGATATGAACGAAACGGATCTTTCTGTGCCGACCATGTACCCACTTTCTCGTTCCAAAAATAAGTTCATTACCATTGGATGCAATCATGTTGGGTTAATCTTGGGGGATGACCAAGGGACTAACGTTGAAAGTGGGTGTATTTCGGTGTGTACGAGAAGAATTAGTGTCGTTGATGGGTTGTGTTCTGGGAGTGGGTGCTGTCAATTGGAGATTCCAAAAGGGTTAACCAAATTGAGTTTGGCGGTGGGTGAGTTGTTGAATTACACTGAAATACGGAAATTCAGTCCCTGTGGGTATGCTTTTATAATTGAAGCTAGGAGGTTCCAGTTTTTGTCAAGTTATATTGATAAGTTTGAAGAGAAGGAAGTTGAGGTTGTGCTTAGTTGGGGCATTAGAAAAGAATTAGAACTTGATTGTGGACTAAACGCCAGAAGGAATAGTAGTATCTTTAATGGAACTCATTATCGTTGCCAATGCCTGGATGGTTACGAGGGGAATCCATATCTCCGTCACGGATGCCAAGATGTGGATGAATGCAAGTATCCATGGCTGAATGACTGTAAGCACAAGGACAAGTGTTCTAACACTGAAGGAAACTATACCTGTCATTGTCCTAAGAACTTCCATGGAGATGGAAGAAAAGGCGGAAAAGGTTGCACCAAAAATTCCACCTCTTCCATTCCTATCATCATTGGGATTGGGGTAGGCCTCCCAGTTTTACTAATAGCCACCACAACCATCTACTTGGGTTACAAGAAATTGAAGTTCATCAAACAAAAACAGCTTTTCTTCCAGAAAAATGGAGGCTTTGTGCTTCAACGACAGCTTTCTCAATGCAATTCACCTAAAGACATCGTAAGAATCTTCAGCCAAGAAGAGTTGGAGAAGGCCACCAACAACTACGCCCAGGACACCATTGCTGGCAAAGGTGGCTACGGTACTGTTTTCAAAGGTGTATTGGACGATGGACTCACCATTGCAATCAAGAAATCAAAATTCATGGACGAATCCCAAACATCCCAATTCATCAATGAAGTCATTGTTCTTTCCCAAATCAACCATCGAAACGTGGTCAAGCTCTTAGGGTGCTGTTTAGAGACCCAAGTCCCATTGTTGGTGTACGAGTTCGTCACCAACGGCACCCTCTTCGATCACATCCATGACACTACCAAACACGTCCCACTTTCTTGGGAAGCTCGCTTGAGAATCGCTTCGGAAACAGCCGGTGTCATTTCGTATTTGCATTCTTCAGCTTCTATTCCCATAATCCACAGAGATATCAAGACGACTAACATACTTTTAGACAATAATTACACTGCAAAGGTCTCTGATTTTGGTGCTTCCAAGTTGGTTCCTAAAGATCAAACTCAGCTAACCACGCTCGTGCAAGGGACTCTCGGGTACTTAGACCCCGAGTACTTATTAACGAGCGAGTTAACTGAGAAGAGTGATGTGTATAGCTTTGGAATTGTGGTTCTGGAGCTTATAACGGGGAAGAAAGCGGTGAGGTTTGATGGGCCGGAAGAAGATCGAAATCTAGCCATGTATGTCCTTTGTGCAATAAAAGAAGACCGTTTTGAAGAAGTGGTGGAGAAGGGAATGGTGAGTGAGGCAAACATGGAGCAAATAAAGGAAGTGGCTAAGGTAGCAAGAGAGTGTGTAAGAATTAAAGGGGAGGAGAGGCCCAGCATGAAGGAGGTGGCTATGGAGTTGGAGGCGCTGCGAGCAACGAAGGGTGAGCATTCATGGGCCAATGTTAGGTTATCCGCCGCAGGAGAGTCGAGCCCATTTGTCGAGAGTGGAAGTATCGGCGCTGTGGATGATAGCATGAAGCTGGAATTGCCACATGTTGAACATGGTAGATGA 2208 44.2 MVMNIKPIMAFMVMMMKIGILSTALAVEASEALPGCDEWCGKVHIPYPFGIKKGCYLNQNFSITCHKTDLNGPPKAEAFLMHTNIRVMNISTNGELHVLRPIVRNCYSYGDNYLDMNETDLSVPTMYPLSRSKNKFITIGCNHVGLILGDDQGTNVESGCISVCTRRISVVDGLCSGSGCCQLEIPKGLTKLSLAVGELLNYTEIRKFSPCGYAFIIEARRFQFLSSYIDKFEEKEVEVVLSWGIRKELELDCGLNARRNSSIFNGTHYRCQCLDGYEGNPYLRHGCQDVDECKYPWLNDCKHKDKCSNTEGNYTCHCPKNFHGDGRKGGKGCTKNSTSSIPIIIGIGVGLPVLLIATTTIYLGYKKLKFIKQKQLFFQKNGGFVLQRQLSQCNSPKDIVRIFSQEELEKATNNYAQDTIAGKGGYGTVFKGVLDDGLTIAIKKSKFMDESQTSQFINEVIVLSQINHRNVVKLLGCCLETQVPLLVYEFVTNGTLFDHIHDTTKHVPLSWEARLRIASETAGVISYLHSSASIPIIHRDIKTTNILLDNNYTAKVSDFGASKLVPKDQTQLTTLVQGTLGYLDPEYLLTSELTEKSDVYSFGIVVLELITGKKAVRFDGPEEDRNLAMYVLCAIKEDRFEEVVEKGMVSEANMEQIKEVAKVARECVRIKGEERPSMKEVAMELEALRATKGEHSWANVRLSAAGESSPFVESGSIGAVDDSMKLELPHVEHGR 735
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16603401 16606954 - CmaCh04G024000.1 Cma04g02400 293481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02400 735 CDD EGF_CA 289 325 - -
Cma04g02400 735 SMART egfca_6 289 334 IPR001881 GO:0005509
Cma04g02400 735 Pfam Protein tyrosine and serine/threonine kinase 421 685 IPR001245 GO:0004672|GO:0006468
Cma04g02400 735 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 16 709 IPR045274 GO:0007166
Cma04g02400 735 Pfam Calcium-binding EGF domain 289 326 IPR001881 GO:0005509
Cma04g02400 735 ProSitePatterns Calcium-binding EGF-like domain signature. 289 316 IPR018097 GO:0005509
Cma04g02400 735 SMART serkin_6 415 688 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g02400 735 CDD STKc_IRAK 422 688 - -
Cma04g02400 735 SUPERFAMILY Protein kinase-like (PK-like) 396 685 IPR011009 -
Cma04g02400 735 SUPERFAMILY EGF/Laminin 288 325 - -
Cma04g02400 735 Gene3D Laminin 251 333 - -
Cma04g02400 735 ProSiteProfiles EGF-like domain profile. 289 325 IPR000742 -
Cma04g02400 735 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 307 318 IPR000152 -
Cma04g02400 735 Pfam Wall-associated receptor kinase galacturonan-binding 36 94 IPR025287 GO:0030247
Cma04g02400 735 Gene3D Transferase(Phosphotransferase) domain 1 491 704 - -
Cma04g02400 735 Gene3D Phosphorylase Kinase; domain 1 382 490 - -
Cma04g02400 735 ProSitePatterns Serine/Threonine protein kinases active-site signature. 536 548 IPR008271 GO:0004672|GO:0006468
Cma04g02400 735 ProSiteProfiles Protein kinase domain profile. 415 698 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g02400 735 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 16 709 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02400 Cma-Chr4:16603401 Cma04g02404 Cma-Chr4:16614532 0 dispersed
Cma04g02398 Cma-Chr4:16596373 Cma04g02400 Cma-Chr4:16603401 8.16E-94 proximal
Cma04g02400 Cma-Chr4:16603401 Cma04g02401 Cma-Chr4:16609922 1.03E-15 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68535 PF07714 PK_Tyr_Ser-Thr 7.60E-47 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02400 - - cpep:111802455 1370.91