Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02402 ATGGACGAATCCCAAACATCCCAATTCATTAATGAAGTCATTGTTCTTTCCCAAATCAACCATCGAAACGTGGTCAAGCTCTTAGGGTGTTGTTTGGAGACCCAAGTTCCATTATTGGTGTTCGAGTTCGTCACCAATGGCACTCTCTTTGATCACATCCACGACACTACCAAACACGAAACAGCCGGAGGCATTTCGTATTTACATTCTTCAGCTTCTATTCCCATCATCCATAGAGATATCAAGACGACCAACATACTTTTAGCCAATAATTACACTGCAAAGTTGGTTTCTATGGATCAAACTCAACTAACCACGCTCATGCAAGGGACTGTTGGGTACTTAGACCCTGAGTACTTATTGACAAGCGAGTTAATTGAGAAGAGTGATGTGTATAGCTTTGGAATTGTGATTCTGAAGCTTATAACGGGGAAGAAAGCGGTGAGGTTTGATGGGCCGGAAGAAGATCGAAATCTAGCCATGTATGTCCTTTGTGCAATAAAAGGAGACCGTTTGGAAGAAGTGGTGGAGAAGGGAATGGTGAGTGAGGCAAACATGGAGCAAATAAAGGAAACACGGCTAAGCTAG 588 42.86 MDESQTSQFINEVIVLSQINHRNVVKLLGCCLETQVPLLVFEFVTNGTLFDHIHDTTKHETAGGISYLHSSASIPIIHRDIKTTNILLANNYTAKLVSMDQTQLTTLMQGTVGYLDPEYLLTSELIEKSDVYSFGIVILKLITGKKAVRFDGPEEDRNLAMYVLCAIKGDRLEEVVEKGMVSEANMEQIKETRLS 195
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16610408 16611057 - CmaCh04G024020.1 Cma04g02402 293483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02402 195 ProSiteProfiles Protein kinase domain profile. 1 195 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g02402 195 SUPERFAMILY Protein kinase-like (PK-like) 3 158 IPR011009 -
Cma04g02402 195 Gene3D Transferase(Phosphotransferase) domain 1 48 193 - -
Cma04g02402 195 Pfam Protein kinase domain 3 152 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g02402 195 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 1 191 - -
Cma04g02402 195 Gene3D Phosphorylase Kinase; domain 1 1 47 - -
Cma04g02402 195 ProSitePatterns Serine/Threonine protein kinases active-site signature. 76 88 IPR008271 GO:0004672|GO:0006468
Cma04g02402 195 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 1 191 IPR045274 GO:0007166
Cma04g02402 195 SMART serkin_6 1 195 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02402 Cma-Chr4:16610408 Cma04g02407 Cma-Chr4:16624131 2.57E-105 dispersed
Cma04g02402 Cma-Chr4:16610408 Cma04g02404 Cma-Chr4:16614532 1.56E-118 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68536 PF00069 Pkinase 1.10E-25 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02402 - - cmos:111460594 338.191