Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02404 ATGAAACACATCATGGCATTCATGGTGATGATGGAGATAGCCATATTATCAACAGCCTTGGCCATGGTAGCATCTCAAGCCTTACCCAGGTGTGACGACCGGTGTGGCGACGTGCAGATTCCATATCCATTCGGCATCAAAGAAGGGTGCTATCTCAATCAAAATTTCTCGATCACTTGCAACAAAACCGATCGCAACGGACCTCCAAAGGCGTATCTAATGCAGACCAATATTAGCGTTACTAATATATCTACTAACGGCGAGCTTCACGTGTTGCAGCCGGTAGTGCGAACTTGCTACGACAAAGCAAATGGTAGTTTTGTTCCCAACGAATCCAATTTTTCTGTGCCGGCCATGTTCCCAATTTCTGGTACCAAAAACAAGTTCGTTACCATTGGGTGCAACACTGCTGGTTTAATCGCTGGGTATCTCCAAGAGAGTTTGTATGGAAGTGGGTGTATTTCGTTGTGTTTAAATAAGAGTGGAGTAGTTAATGGGTCGTGTTCTGGGAGTGGGTGCTGTCAGTTGGAGATTCCAAATGGGTTAACCAATTTGAGTTTGGCGGTGACTGGGTTGTTGAATTTCGCCGACGTAAGGACATTCAATCACTGTGGGTATGCTTTTGTAATTGAAGCTGATAGGTTCCAGTTTTTGTCACGTTATATTGAGAATTTTGAAGAGGAAGTTGAGGTTGTGCTTGATTGGGGCATTAGAAATGAAACAAGAATTGAATGTGGATCAAACGCCAGAAGGACTAATAGTATCTTTAATGGAACTCAATATCGTTGCCAATGCTTGGATGGTTACGAGGGGAATCCATATCTCCGTCACGGTTGTCAAGATGTGGATGAATGCAAGTATCCATGGCTGAATGACTGTAAGCACAAGGACAAGTGTTCTAACACTGAAGGAAACTATACCTGTCATTGTCCTAAGAACTTCCATGGAGATGGAAGAAAAGGCGGAAAAGGTTGCACCAAAAATTCCACCTCTTCCATTCCTATCATCATTGGGATTGGGGTAGGCCTCCCAGTTTTACTAATAGCCACCACAACCATCTACTTGGGTTACAAGAAATTGAAGTTCATCAAACAAAAACAGCTTTTCTTCCAGAAAAATGGAGGCTTTGTGCTTCAACGACAGCTTTCTCAATGGAATTCACCAAACGACATGGTTAGAATTTTCAGCCAAGAAGAGTTAGAGAAGGCCACCAACAACTACGCCCAGGACACCATTGCGGGCAAAGGTGGCTTCGGTACTGTTTACAAAGGTGTATTGGACGATGGACTCACCATTGCAATCAAGAAATCAAAATTCATGGACGAATCCCAAACATCCCAATTCATCAATGAAGTCATTGTTCTTTCCCAAATCAACCATCGAAACGTGGTCAAGCTCTTAGGGTGCTGTTTAGAGACCCAAGTCCCATTGTTGGTGTACGAGTTCGTCACCAACGGCACCCTCTTCGATCACATCCATGACACTACCAAACACGTCCCACTTTCTTGGGAAGCTCGCTTGAGAATCGCTTCGGAAACAGCCGGTGTCATTTCGTATTTGCATTCTTCAGCTTCTATTCCCATAATCCACAGAGATATCAAGACGACTAACATACTTTTAGACAATAATTACACTGCAAAGGTCTCTGATTTTGGTGCTTCCAAGTTGGTTCCTAAGGATCAAACTCAGCTAACCACGCTCGTGCAAGGGACTCTCGGGTACTTAGACCCCGAGTACTTATTGACGAGCGAGTTAACTGAGAAGAGTGATGTGTATAGCTTTGGAATTGTGGTTCTAGAGCTTATAACGGGGAAGAAAGCGGTGAGGTTTGATGGGCCGGAAGAAGATCGAAATCTAGCCATGTATGTCCTTTGTGCAATAAAAGAAGACCGTTTGGAAGAAGTGGTGGAGAAGGGAATGGTGAGTGAGGCAAACATGGAGCAAATAAAGGAAGTGGCTAAGGTAGCAAGAGAGTGTGTAAGAATCAAAGGGGAGGAGAGGCCCAGCATGAAGGAAGTGGCTATGGAGTTGGAGGGGCTGCGGGCAACGAAGGGTGAGCATTCATGGGCCAACGTCAATTTATCCAGCGCAGAAGAGACGGTGTATTTGCTGGATGGAGCATCAGAGTCGAGCCAATTGGTTGGGAGTGGAAGTATGAGCACTGTGGGGAATAGCATAAAGCTGGAAATAACACTAATGGAGCATGGTAGATGA 2214 44.67 MKHIMAFMVMMEIAILSTALAMVASQALPRCDDRCGDVQIPYPFGIKEGCYLNQNFSITCNKTDRNGPPKAYLMQTNISVTNISTNGELHVLQPVVRTCYDKANGSFVPNESNFSVPAMFPISGTKNKFVTIGCNTAGLIAGYLQESLYGSGCISLCLNKSGVVNGSCSGSGCCQLEIPNGLTNLSLAVTGLLNFADVRTFNHCGYAFVIEADRFQFLSRYIENFEEEVEVVLDWGIRNETRIECGSNARRTNSIFNGTQYRCQCLDGYEGNPYLRHGCQDVDECKYPWLNDCKHKDKCSNTEGNYTCHCPKNFHGDGRKGGKGCTKNSTSSIPIIIGIGVGLPVLLIATTTIYLGYKKLKFIKQKQLFFQKNGGFVLQRQLSQWNSPNDMVRIFSQEELEKATNNYAQDTIAGKGGFGTVYKGVLDDGLTIAIKKSKFMDESQTSQFINEVIVLSQINHRNVVKLLGCCLETQVPLLVYEFVTNGTLFDHIHDTTKHVPLSWEARLRIASETAGVISYLHSSASIPIIHRDIKTTNILLDNNYTAKVSDFGASKLVPKDQTQLTTLVQGTLGYLDPEYLLTSELTEKSDVYSFGIVVLELITGKKAVRFDGPEEDRNLAMYVLCAIKEDRLEEVVEKGMVSEANMEQIKEVAKVARECVRIKGEERPSMKEVAMELEGLRATKGEHSWANVNLSSAEETVYLLDGASESSQLVGSGSMSTVGNSIKLEITLMEHGR 737
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16614532 16617695 - CmaCh04G024040.1 Cma04g02404 293485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02404 737 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 12 702 - -
Cma04g02404 737 ProSitePatterns Calcium-binding EGF-like domain signature. 281 308 IPR018097 GO:0005509
Cma04g02404 737 SMART egfca_6 281 326 IPR001881 GO:0005509
Cma04g02404 737 PIRSF SRK 275 333 IPR024171 GO:0004674
Cma04g02404 737 PIRSF SRK 52 181 IPR024171 GO:0004674
Cma04g02404 737 PIRSF SRK 223 285 IPR024171 GO:0004674
Cma04g02404 737 PIRSF SRK 317 725 IPR024171 GO:0004674
Cma04g02404 737 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 12 702 IPR045274 GO:0007166
Cma04g02404 737 ProSitePatterns Serine/Threonine protein kinases active-site signature. 528 540 IPR008271 GO:0004672|GO:0006468
Cma04g02404 737 Pfam Wall-associated receptor kinase galacturonan-binding 31 87 IPR025287 GO:0030247
Cma04g02404 737 Pfam Calcium-binding EGF domain 281 318 IPR001881 GO:0005509
Cma04g02404 737 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 299 310 IPR000152 -
Cma04g02404 737 Gene3D Phosphorylase Kinase; domain 1 382 482 - -
Cma04g02404 737 Gene3D Laminin 239 325 - -
Cma04g02404 737 CDD EGF_CA 281 317 - -
Cma04g02404 737 SMART serkin_6 407 680 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g02404 737 CDD STKc_IRAK 414 680 - -
Cma04g02404 737 SUPERFAMILY Protein kinase-like (PK-like) 388 682 IPR011009 -
Cma04g02404 737 ProSiteProfiles EGF-like domain profile. 281 317 IPR000742 -
Cma04g02404 737 ProSiteProfiles Protein kinase domain profile. 407 690 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g02404 737 Pfam Protein tyrosine and serine/threonine kinase 413 677 IPR001245 GO:0004672|GO:0006468
Cma04g02404 737 Gene3D Transferase(Phosphotransferase) domain 1 483 699 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02398 Cma-Chr4:16596373 Cma04g02404 Cma-Chr4:16614532 1.24E-65 dispersed
Cma04g02400 Cma-Chr4:16603401 Cma04g02404 Cma-Chr4:16614532 0 dispersed
Cma04g02401 Cma-Chr4:16609922 Cma04g02404 Cma-Chr4:16614532 1.88E-32 dispersed
Cma04g02404 Cma-Chr4:16614532 Cma04g02407 Cma-Chr4:16624131 0 dispersed
Cma04g02402 Cma-Chr4:16610408 Cma04g02404 Cma-Chr4:16614532 1.56E-118 proximal
Cma04g02403 Cma-Chr4:16611088 Cma04g02404 Cma-Chr4:16614532 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68537 PF07714 PK_Tyr_Ser-Thr 1.70E-47 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02404 - - cmos:111460594 1323.92