Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02406 ATGCTCAAGTCTGTTGGATCACACAACAAGCTCAATTTCACTTCCATCTCAAAACCTTTCAACAACTTTCACCATCTTCATCCTTTCCCTTCGCATGGGGCGACAAATCGAGACGCTCATTCGACTCATGATCGCAAACATACTCATCCTATCACTGCTGGTTACGCAGCAACGGCGGTAGCAGCATCTCAAGCCTTACTCGGGTGGGACGATTGGTGTGGCGACTTGCAGATTCCATATCCATTTGGCACAAAGAAAGGGTGTTACCTAAACAAAAAAAATTTAATTACCTGTAACACAACTCATTTCGATCGCCCAACGCCATTTCTCCGGGCCAGCAACATTCGAGTTACGAATATATCCATCTCCGGTGAGCTCCAGATCTTACACTTCACAGCCAAAGATTGCTACCCCAAAAACAACACCCTTGATGCACGTCCGTCCTCCGCCGGTTTCAAGTTATTAGAATTCATAGTTTCCAGTACCAAAAACAAGTTCATTGTCATTGGCTGTGAAACTTACGCTTATCTTTCTGGCCTAATCGAGGGGCAAAGCTATAGAACAGCATGCGTGGCGTTGTGTGATAACATCACCACCGTAAGAGATGGCGCCTGCTCTGGTAATGGGTGCTGTCAGCTAGACATCCCCAGCGGCTTAAAGCGTTTGAATTATACTGTGTCGAGCTTCGAAGATCATAATGGTGTCTTGAGTTTTAGTTCATGTGGGTATGCCTTTGTGACTGAGGAAGACAAGTTTCATTTCTCGGCGGCTTATATTCGTAATTTCACACGAAAGAGAGTTCCGGCGGTGCTTGATTGGGGTATTAGTAATACCACTTGCTTGACGGCTAACAACAAAAGTAATTGTATTTGTGGGCCCAATAGCATGATGGTTAACTCTCTCCCTGATGGATCTGAATATCGATGTGGGTGCTTGGAAGGGTTTGAGGGTAATCCTTATCTTCTTCAAGGATGTCAAGCTCCTCTTATTCTTTCATTCAATCCGGAACCCCAAAGCTACAAGAAAGACGAGACTACAACCGCTACTTGCCTGGATGAAAGGCTGAATAAGTGCAAGTTTGAGTGTGTTAACACTGCAGGGAACTATACTTGTAATTGTCCAAAGGGTTTTAAAGGAGATGGACGACTGGGGGAGAAGGTTGCACTCAAAGCTCCAAGCCTTTTGACGTGCACGTCGTCATTGATAGTATCAGAGCCAGACACCGGGTGGTGTGTGCTAACGAAAACGTTGGGATCTCAAGGAGGAATTTGGGTGGGGTTGGCAGTCTTAGTAATTGGGAGTACACGGCTATACTTGGGCTACAGAAAGTGGAAGCTCATCAAACTAAAAGAGAAGTTTTTCGAGGAAAATGGAGGCTTAATGCTTCAACGACATCTCTCTCAATGGAAATCATCCACAGACACAGTCACAATCTTCACCCAAGAGGAGCTAGACAAGGCCACAAACAAGTACGATGAAAGCGCCGTGATTGGAAAAGGCGGCTACGGCACAGTCTACAAAGGCATCTTACCCGACGGCTCAGTACTCTTAGGGTGTTGTTTGGAGACCCAAGTCCCATTATTGGTCTACGAGTTCGTCACCAACGGCACCCTCTTCGATCACATCCATGACACTACCAAACACGTCCCACTTTCTTGGGAAGCTCGCTTGAGAATCGCTTCCGAAACAGCCGGTGTCATTTCGTATTTGCATTCTTCAGCTTCTATTCCCATAATCCACAGAGATATCAAGACTACTAACATACTTTTAGACAATAATTACACTGCAAAGGTCTCTGATTTTGGTGCTTCCAAGTTGGTTCCATTGGATCAAACTCAATTATCCACTATGGTGCAAGGGACTCTTGGATATTTGGACCCGGAGTATTTGTTAACAAGTGAGTTGACGGAGAAGAGCGATGTGTATAGCTTTGGAATTGTGCTTCTAGAGCTGATAACCGGGAAGAAGTGA 1971 45.31 MLKSVGSHNKLNFTSISKPFNNFHHLHPFPSHGATNRDAHSTHDRKHTHPITAGYAATAVAASQALLGWDDWCGDLQIPYPFGTKKGCYLNKKNLITCNTTHFDRPTPFLRASNIRVTNISISGELQILHFTAKDCYPKNNTLDARPSSAGFKLLEFIVSSTKNKFIVIGCETYAYLSGLIEGQSYRTACVALCDNITTVRDGACSGNGCCQLDIPSGLKRLNYTVSSFEDHNGVLSFSSCGYAFVTEEDKFHFSAAYIRNFTRKRVPAVLDWGISNTTCLTANNKSNCICGPNSMMVNSLPDGSEYRCGCLEGFEGNPYLLQGCQAPLILSFNPEPQSYKKDETTTATCLDERLNKCKFECVNTAGNYTCNCPKGFKGDGRLGEKVALKAPSLLTCTSSLIVSEPDTGWCVLTKTLGSQGGIWVGLAVLVIGSTRLYLGYRKWKLIKLKEKFFEENGGLMLQRHLSQWKSSTDTVTIFTQEELDKATNKYDESAVIGKGGYGTVYKGILPDGSVLLGCCLETQVPLLVYEFVTNGTLFDHIHDTTKHVPLSWEARLRIASETAGVISYLHSSASIPIIHRDIKTTNILLDNNYTAKVSDFGASKLVPLDQTQLSTMVQGTLGYLDPEYLLTSELTEKSDVYSFGIVLLELITGKK 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16618650 16621785 + CmaCh04G024060.1 Cma04g02406 293487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02406 656 Gene3D Laminin 346 387 - -
Cma04g02406 656 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 45 515 - -
Cma04g02406 656 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 516 656 - -
Cma04g02406 656 SUPERFAMILY EGF/Laminin 349 381 - -
Cma04g02406 656 SMART egf_5 349 398 IPR000742 -
Cma04g02406 656 SMART egf_5 279 326 IPR000742 -
Cma04g02406 656 SMART serkin_6 491 656 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g02406 656 SUPERFAMILY Protein kinase-like (PK-like) 477 655 IPR011009 -
Cma04g02406 656 ProSiteProfiles Protein kinase domain profile. 447 656 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g02406 656 Gene3D Transferase(Phosphotransferase) domain 1 533 656 - -
Cma04g02406 656 ProSitePatterns Serine/Threonine protein kinases active-site signature. 578 590 IPR008271 GO:0004672|GO:0006468
Cma04g02406 656 Gene3D Phosphorylase Kinase; domain 1 459 516 - -
Cma04g02406 656 CDD EGF_CA 362 380 - -
Cma04g02406 656 Pfam Protein kinase domain 517 655 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g02406 656 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 516 656 IPR045274 GO:0007166
Cma04g02406 656 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 45 515 IPR045274 GO:0007166
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02406 Cma-Chr4:16618650 Cma15g00643 Cma-Chr15:3040061 8.89E-165 dispersed
Cma04g02406 Cma-Chr4:16618650 Cma04g02407 Cma-Chr4:16624131 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68538 PF00069 Pkinase 2.70E-27 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02406 - - cmos:111461403 915.605