Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02407 ATGGGGCGTCAAATCAAGACGCATATTCGACTCATGATCATAAACATACTCATCCTCTCACCGTCCGTTTATGCAGTAGCATCTCAAGCCTTGCTCGGGTGCGACGATCGGTGTGGCGACTTACAGATTCCATATCCATTCGGCACAAGGGAAGGGTGTTACCTAAACAAAAATTTCTTGATTACTTGTAACACAACTCATTTCGATCCCCCGAGGCCATTTCTCCGGACCGGCAACATTCAAGTTACGAATATATCCATCTCCGGTGAGCTCCAAATCTTGCACTTTGGGGCCAAAGATTGCTACCCCAAAAACAATAGCCTCGACGCACGTCGGACCTCCGCCACTCTCAACTTATCCACGTTCACAGTTTCCAGTACCAAAAACAAGTTCACTGTTATCGGCTGTGATACATACGCTTTTCTTTCTGGCCAAATCGAGGGGCAAAGCTATAGAACAGCATGCGTGGCGTTGTGTGATAACATCACCACAGTAAGAGATGGCGCCTGCTCTGGTAATGGGTGCTGTCAGCTTGACATCCCTAGCGGCTTAAAGGGTTTGAGATATAGGGTGCGCAGCTTCGACAATCACACCGACGTCTTCAGCTTTAATCCATGTGGGTATGCCTTTGTGACTGAGGAAGACAAGTTTCATTTCTCGGCGGCTTATATTCGCAATTTCCCACAAAGGCAAGTTCCTGTTGTGCTTGATTGGGGCATTAGTAATACCACTTGCTCCACGGCTAACAACAAAAGTAACTGTATTTGTGGGCCCAATAGCATGATGGTTAACGTTCTCCCTGATGGATCTGAATATCGTTGTGGGTGCTTGGATGGGTTTGAGGGTAATCCTTATCTTCCTCGAGGATGTCAAGATATTGATGAATGTAGGGATGAAAGGCTGAATGATTGCAAGTTTGAGTGTGTTAACACTAAAGGGAACTATACTTGTAATTGTCCGGAGGGTTTTAAAGGTGATGGACGACGTGGGGGTGAAGGAGTATCCGTGGGGTTCACAGTCTTAGTAATTGGGAGTACATGGCTATACTTAGGCTACAGAAAATGGAAGCTCATCAAACTAAAAGAGAAGTTCTTCGAGGAAAATGGAGGCTTAATGCTTCAACGACATCTCTCTCAATGGAAATCATCCACAGACACAGTCACAATCTTCACCCAAGAGGAGCTAGACAAGGCCACAAACAAGTACGATGAAAGCGCCGTGATTGGAAAAGGCGGCTACGGCACAGTCTACAAAGGCATCTTACCCGACGGCTCAGTAGTAGCAATCAAAAAATCAAAATTAGTAGACCAATCCCAAACATCCCAATTCATCAATGAAGTCATTGTTCTTTCCCAAATCAACCATCGAAACGTGGTCAAGCTCTTAGGGTGTTGTTTGGAGACCCAAGTCCCATTATTGGTCTACGAGTTCGTCACCAATGGCACCCTCTTCGATCACATCCATGACACTACCAAACACGTCCCACTTTCTTGGAAAGCTCGCTTGAGAATCGCTTTGGAAACAGCCGGAGTCATTTCGTATTTGCATTCATCCGCTTCCACTCCAATTATCCATAGAGATATCAAGACGACCAACATACTTTTAGATGATAATTACAATGCAAAGGTCTCTGATTTTGGTGCTTCCAAGTTGGTTCCATTGGATCAAACTCAATTATCCACTATGGTGCAAGGGACTCTTGGATATTTGGACCCGGAGTATTTGTTAACGAGTGAGTTGACGGAGAAGAGCGATGTGTATAGTTTTGGAATTGTGCTTCTAGAGCTGATAACCGGGAAGAAGGCGGTGAGTTTCGAGGGGCCGGAAGCGGAGAGGAATTTAGCTATGTATGTTCTATGTGCAATGAAGGAAGATCGGTTGGGGGAGGTTGTGGAGAAGGGAATGGCGAGGGAAGGGGAGTTTGAGCAGATAAAAGATGTGGGGAAGGTTGCGAGGAAGTGCTTGAGAATAAGTGGGGAGGAGCGGCCGAGCATGAAGGAGGTGGTCATGGAGTTGGAGGGTTTGAGAGTGATGGCTGAACATGAGTGGGTTGATGAAGAAAATTTGGTGGCAGATGGAGCTTCGAATATATTTGTGGTGAGTGGGAGTACAAATGTTGTGGATGATAGCATGAAAGTTCAGGTTTTGCCACTGATTCATGATGGAAGATGA 2172 45.76 MGRQIKTHIRLMIINILILSPSVYAVASQALLGCDDRCGDLQIPYPFGTREGCYLNKNFLITCNTTHFDPPRPFLRTGNIQVTNISISGELQILHFGAKDCYPKNNSLDARRTSATLNLSTFTVSSTKNKFTVIGCDTYAFLSGQIEGQSYRTACVALCDNITTVRDGACSGNGCCQLDIPSGLKGLRYRVRSFDNHTDVFSFNPCGYAFVTEEDKFHFSAAYIRNFPQRQVPVVLDWGISNTTCSTANNKSNCICGPNSMMVNVLPDGSEYRCGCLDGFEGNPYLPRGCQDIDECRDERLNDCKFECVNTKGNYTCNCPEGFKGDGRRGGEGVSVGFTVLVIGSTWLYLGYRKWKLIKLKEKFFEENGGLMLQRHLSQWKSSTDTVTIFTQEELDKATNKYDESAVIGKGGYGTVYKGILPDGSVVAIKKSKLVDQSQTSQFINEVIVLSQINHRNVVKLLGCCLETQVPLLVYEFVTNGTLFDHIHDTTKHVPLSWKARLRIALETAGVISYLHSSASTPIIHRDIKTTNILLDDNYNAKVSDFGASKLVPLDQTQLSTMVQGTLGYLDPEYLLTSELTEKSDVYSFGIVLLELITGKKAVSFEGPEAERNLAMYVLCAMKEDRLGEVVEKGMAREGEFEQIKDVGKVARKCLRISGEERPSMKEVVMELEGLRVMAEHEWVDEENLVADGASNIFVVSGSTNVVDDSMKVQVLPLIHDGR 723
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16624131 16627910 + CmaCh04G024070.1 Cma04g02407 293488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02407 723 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 19 694 IPR045274 GO:0007166
Cma04g02407 723 ProSiteProfiles Protein kinase domain profile. 402 684 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g02407 723 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 308 319 IPR000152 -
Cma04g02407 723 CDD EGF_CA 292 326 - -
Cma04g02407 723 ProSitePatterns Calcium-binding EGF-like domain signature. 292 317 IPR018097 GO:0005509
Cma04g02407 723 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 19 694 - -
Cma04g02407 723 CDD STKc_IRAK 408 675 - -
Cma04g02407 723 ProSitePatterns Serine/Threonine protein kinases active-site signature. 523 535 IPR008271 GO:0004672|GO:0006468
Cma04g02407 723 Pfam Protein kinase domain 402 669 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g02407 723 Gene3D Phosphorylase Kinase; domain 1 369 477 - -
Cma04g02407 723 SUPERFAMILY EGF/Laminin 291 327 - -
Cma04g02407 723 SMART serkin_6 402 684 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g02407 723 Pfam Wall-associated receptor kinase galacturonan-binding 34 89 IPR025287 GO:0030247
Cma04g02407 723 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 34 - -
Cma04g02407 723 SUPERFAMILY Protein kinase-like (PK-like) 380 673 IPR011009 -
Cma04g02407 723 Gene3D Transferase(Phosphotransferase) domain 1 478 696 - -
Cma04g02407 723 Pfam Calcium-binding EGF domain 292 324 IPR001881 GO:0005509
Cma04g02407 723 Gene3D Plasmodium vivax P25 domain 236 332 - -
Cma04g02407 723 SMART egfca_6 292 332 IPR001881 GO:0005509
Cma04g02407 723 SMART egf_5 244 291 IPR000742 -
Cma04g02407 723 SMART egf_5 295 339 IPR000742 -
Cma04g02407 723 ProSitePatterns Protein kinases ATP-binding region signature. 408 431 IPR017441 GO:0005524
Cma04g02407 723 ProSiteProfiles EGF-like domain profile. 292 326 IPR000742 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01026 Cma-Chr1:7541931 Cma04g02407 Cma-Chr4:16624131 0 dispersed
Cma01g01027 Cma-Chr1:7547175 Cma04g02407 Cma-Chr4:16624131 4.75E-31 dispersed
Cma04g02402 Cma-Chr4:16610408 Cma04g02407 Cma-Chr4:16624131 2.57E-105 dispersed
Cma04g02403 Cma-Chr4:16611088 Cma04g02407 Cma-Chr4:16624131 4.24E-108 dispersed
Cma04g02404 Cma-Chr4:16614532 Cma04g02407 Cma-Chr4:16624131 0 dispersed
Cma04g02407 Cma-Chr4:16624131 Cma15g00643 Cma-Chr15:3040061 2.47E-88 dispersed
Cma15g00109 Cma-Chr15:493811 Cma04g02407 Cma-Chr4:16624131 1.71E-88 dispersed
Cma04g02406 Cma-Chr4:16618650 Cma04g02407 Cma-Chr4:16624131 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68539 PF00069 Pkinase 2.10E-47 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02407 - - cmos:111461403 1373.99