Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02414 ATGTTCTCGAGGGATTCTAACGTTCTATTCAGTGGCGGCGGTATCAGTTTTCTCCATGGAAACCATACTGGAAAGTTTAGCTATGGCTATTCTAGTTTCAAGGGTAAAAGGGCATCAATGGAGGACTTCTACGAAACTAGAATTTCTGAAGTCGATGGGCAGATGGTCGCTTTTTTTGGTGTTTTTGATGGTCATGGAGGTTCCAGAACAGCTGAATACCTTAAGCGCAATCTTTTCAAGAACCTAAGTAGCCATCCAGGCTTTATCAAAGACACAAAGGCAGCTATTACTGAGGTTTTTAGGCAAACGGATGCAGACTATATTAATGAAGAGAGAGGTCAGCAGAAAGATGCCGGGTCAACTGCATCAACTGCTGTCCTGTTAGGGGATCGTCTCCTTGTTGCTAATGTTGGGGATTCGAGAGTAGTCGCGTCTAGAGCTGGTTCAGCTATTCCCCTCTCTATTGATCACAAGCCTGATCGATCAGATGAACGGCGAAGGATTGAAGATGCTGGAGGTTTCATTCTTTGGGCTGGAACTTGGAGGGTTGGTGGTATTCTAGCAGTTTCACGTGCCTTTGGAGATAAGCTACTCAAACGATACGTTGTTGCTGATCCCGAAATTAAGGAAGAAGAAATCCCCAGTGTAGACTTTATAATTATTGCAAGCGATGGACTTTGGAATGTCATATCAAATGAGGAAGCTGTATCATTAGTGCAACACATCCAAGATGCAGAAATGGCTTCAAGAAAACTCATTCAAGAAGCTTATGCACGAGGGAGTACCGACAACATTACGTGTGTCATCGACTGGACGAAAATGGTGAACGATACTGAGTATTATGATGTTCTCGGTGTTCGTCCTTCTGCTTCCGAGGAGGAGATACGTAAGGCCTATTATCTCAAGGCGAAACAAGTCCATCCGGATAAGAATTTGAATGATCCTCAAGCTGCTGATAGGTTTCAGGCAAGTGTACTAAACTGGTTTTTATCGTCTTCTTTACCTTCTGCTGTTTATGTGCTTGGTGAAGCATATCAAGTTTTGAGTGATGCAGTCCAAAGAGAGGCATATGATAGGAATGGGAAGCACGGTATTACTAGGGAATCCATGCTTGACCCTACTGCTGTCTTTGCACTTCTATTTGGAAGTGAATTATTTGAGGACTACATCGGACATTTAGCGGTAGCATCAATGGCTTCATCTGAATTAGAGAGCGAAACTGGTAATCCAGAGAGACTACATGAGAAGTTGAAGGCAAGTTGCCTAATGGCTGTCCAGAAAGAAAGAGAAGAAAAACTTGCACGTGTACTTGAGGGTTTTCTTAATCAATATGTTCAAGGTGACAAGGATGGATTCTTACGGCATGCTGAATCTGAAGCCAAAAGTCTTTCAAATGCGGCTTTTGGTGCTAGTATATTACACACTATAGGCTACATTTATTCAAGACAAGCAGCACAAGAGCTTGGAAAGAGAGCCATTTATCTTGGCGTGCCATTTGTGGCTGAATGGTTTCGCAACAAGGGACATTTTTGGAAGTCACAGATAACGGCTGCAAAAGGCAGGAAAATCTCAAGCTTACACTTCGTCCTCTGTTTCTCATCGATGATTGAGTATTCTGCTTTGATATTTTGCTACCTAATCAGATCAACAATTTATATGTATCCAGGTGCTTTCCAGTTGTTACAACTTCAAGATGATATTTCCCGGCAGTTTAAAATGGATGGTAGTGGCCCAGGAAATGATATTGAATCGCATATACGAGCGAATAAAGACACATTCCTGAATTCTTTGTGGAAGCTTAACGTAGTGGACATTGAACTGACTCTTGTAAATGTGTGCCAGATGGTCCTACGGGATGATACTGTTAAAAAGGAAGAACTAAAAGCCCGTGCTCTGGCAATGAAGATTCTTGGAAAGATATTCCAGCAGGAGAAGCATGCACAAAATGGTGGAACGTCAAGAAAGAAAAGTGCTGCTGCAGTAGATGACGATGGAACGAGTTCAGAGAGTAGTGATGATGAGGATCACCAGAGACCACTATCATATCGAACTCCTTTTCTTACTCAGGCAACACCTCACACTGGTATTGGTAGACTCTTCAGGTGTCTCTGTAACCCAGCATTTGATGTAGAGGATGACGAAATCGTGTATAAAAGCAAATGA 2163 42.49 MFSRDSNVLFSGGGISFLHGNHTGKFSYGYSSFKGKRASMEDFYETRISEVDGQMVAFFGVFDGHGGSRTAEYLKRNLFKNLSSHPGFIKDTKAAITEVFRQTDADYINEERGQQKDAGSTASTAVLLGDRLLVANVGDSRVVASRAGSAIPLSIDHKPDRSDERRRIEDAGGFILWAGTWRVGGILAVSRAFGDKLLKRYVVADPEIKEEEIPSVDFIIIASDGLWNVISNEEAVSLVQHIQDAEMASRKLIQEAYARGSTDNITCVIDWTKMVNDTEYYDVLGVRPSASEEEIRKAYYLKAKQVHPDKNLNDPQAADRFQASVLNWFLSSSLPSAVYVLGEAYQVLSDAVQREAYDRNGKHGITRESMLDPTAVFALLFGSELFEDYIGHLAVASMASSELESETGNPERLHEKLKASCLMAVQKEREEKLARVLEGFLNQYVQGDKDGFLRHAESEAKSLSNAAFGASILHTIGYIYSRQAAQELGKRAIYLGVPFVAEWFRNKGHFWKSQITAAKGRKISSLHFVLCFSSMIEYSALIFCYLIRSTIYMYPGAFQLLQLQDDISRQFKMDGSGPGNDIESHIRANKDTFLNSLWKLNVVDIELTLVNVCQMVLRDDTVKKEELKARALAMKILGKIFQQEKHAQNGGTSRKKSAAAVDDDGTSSESSDDEDHQRPLSYRTPFLTQATPHTGIGRLFRCLCNPAFDVEDDEIVYKSK 720
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16659574 16670029 - CmaCh04G024140.1 Cma04g02414 293495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02414 720 Pfam Protein phosphatase 2C 28 265 IPR001932 -
Cma04g02414 720 CDD DnaJ 279 350 IPR001623 -
Cma04g02414 720 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 274 520 - -
Cma04g02414 720 SMART dnaj_3 278 353 IPR001623 -
Cma04g02414 720 ProSiteProfiles dnaJ domain profile. 279 361 IPR001623 -
Cma04g02414 720 SUPERFAMILY Chaperone J-domain 273 391 IPR036869 -
Cma04g02414 720 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 548 699 - -
Cma04g02414 720 SUPERFAMILY PP2C-like 23 269 IPR036457 -
Cma04g02414 720 SMART PP2C_4 17 270 IPR001932 -
Cma04g02414 720 ProSiteProfiles PPM-type phosphatase domain profile. 27 272 IPR001932 -
Cma04g02414 720 Gene3D - 20 272 IPR036457 -
Cma04g02414 720 Gene3D DnaJ domain 273 376 IPR036869 -
Cma04g02414 720 Pfam DnaJ domain 279 322 IPR001623 -
Cma04g02414 720 PRINTS DnaJ domain signature 333 353 IPR001623 -
Cma04g02414 720 PRINTS DnaJ domain signature 299 314 IPR001623 -
Cma04g02414 720 PRINTS DnaJ domain signature 281 299 IPR001623 -
Cma04g02414 720 PRINTS DnaJ domain signature 353 372 IPR001623 -
Cma04g02414 720 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 548 699 - -
Cma04g02414 720 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 274 520 - -
Cma04g02414 720 MobiDBLite consensus disorder prediction 647 686 - -
Cma04g02414 720 Pfam X-domain of DnaJ-containing 426 651 IPR026894 -
Cma04g02414 720 CDD PP2Cc 26 269 IPR001932 -
Cma04g02414 720 ProSitePatterns PPM-type phosphatase domain signature. 58 66 IPR000222 GO:0043169
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01681 Cma-Chr1:11465044 Cma04g02414 Cma-Chr4:16659574 7.38E-123 dispersed
Cma04g02414 Cma-Chr4:16659574 Cma09g00389 Cma-Chr9:1640856 1.66E-123 dispersed
Cma06g00020 Cma-Chr6:128639 Cma04g02414 Cma-Chr4:16659574 7.92E-42 dispersed
Cma18g01322 Cma-Chr18:10121096 Cma04g02414 Cma-Chr4:16659574 3.31E-32 dispersed
Cma09g00005 Cma-Chr9:19368 Cma04g02414 Cma-Chr4:16659574 3.35E-131 transposed
Cma15g00634 Cma-Chr15:2995479 Cma04g02414 Cma-Chr4:16659574 1.05E-71 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02414 - - jre:108981366 943.34