Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02442 ATGGATTTCGTTGAAGGTGTTGGAGAGAGTTCTTCGCCGCCTCGATGCTTTGGTGCCTTCTGTGGTGTCCACGATATTCGGAACGATGTTTATACTCGGTTGGTTGAGAGTGGACATGAGGAGGCCGCTTCTAATCCACTGTTTCGTGAGAACTTGGATGCACACTTCAATCGCTTGCCTCCAAGTTATGGACTTGATGTTAACATGGAAAAGGTGGAAGATGTTGTGTTACATCAAAATCTTCTTTCTCTAGCAAAGGATCCAGAGAAGTGCCCTGTTTACCACATTCGCTTTCTCGAGCACATATGTACTAAAACAGATGGCAATGACGATGATGAACTTGATAGTATTCTTCTAAGTGGTTCATCTAATGAGGCAGCTGATAAAAGTTTTCCAGTGTCACACAAGAGAATAAGGGGCAATATACTTGACTTTGAGCCTTGTTCCAAGCTTGAGGACTTAAAACTGGATGTTAGAAAGAACTCAAAAGCCATGGATGGGAGATATCTTATGGAAAGTTTTTCTAAGAGGCAGGGTATTTCACACGTACCGGTACATGAAGTGATATTTTCAACTGTTGACAAGCCAAAGCTTCTTAGCCAGCTGTCTGCTTTGCTTTCTGATATAGGACTTAACATTCGAGAAGCACATGTGTTTTCAACATCTGATGGTTACTCCTTGGATGTATTTGTGGTGGATGGATGGCCTGCTGAGGAAACTGATGGCTTGTACGAAGCTATGGAAAAAGCAGTTGCTAGATATGAGGGGTCGTGGTCTGGTTCTTCACACTCTCATTCAGCAGTCAAGAAAGCATTAGACGCCCAGACAAAATCAGCAGATTGGGAAATAGATAGACGGTTGCTGAAGATTGGCGAAAAAATTGCAACTGGATCTTGTGGTGATTTGTATCATGGACTATATCTTGGTCAAGATGTAGCTGTCAAGATATTAAGATCAGAAGATCTAAATGCTGATTTAGAGGATGAATTCAATCAAGAAGTGGCAATTCTCAGGAAGGTCCAGCATAAAAATGTAGTTCGTTTTATAGGTGCATCTACAAACTCTCCACATTTGTGTATAGTAACAGAGTATATGCCTGGAGGGAGTCTTTATGAGTACTTGCACAAGAATCATTGCGTGTTACAGCTGTCACAACTGCTGAAGTTTGCTATTGATGTTTGTGAAGGAATGGCATACTTACATTTTAATAACATTATTCATAGAGATTTGAAGACAGCAAATCTGCTAATGAACACTGAACATGTTGTAAAGGTGGCAGATTTTGGTGTCGCGCGATTCCAGAGCCAAGGAGTCATGACAGCGGAAACTGGAACATATAGATGGATGGCGCCTGAGGTAATAAATCATCTGCCGTATGATCAGAAAGCAGATATTTTCAGTTTTGCGATTGTGCTGTGGGAACTAATTACAGCAAAGGTTCCTTATGATTCCATGACACCGCTACAAGCTGCCCTAGGAGTAAGACAGGGACTACGTCCGGATCTTCCCGAAAATGTGCACCCTAAAGTATTGGATTTGATGCAAAGATGCTGGGATGCAGATCCGGTCAATCGGCCTCCATTTACTGAGATAAAAGTTGAACTTCAAAATCTCCTGGAAGAAGTTCAGAAGAAGAGTTGTAATCAAGTTCAGCTATTTGAGTCGATCAAACTTGATTATTGTAGCAGCCATGCTAAAATGGAAATGGTGACCAAGATATATGAAGCCAACTTTGCTGCGTGA 1743 41.59 MDFVEGVGESSSPPRCFGAFCGVHDIRNDVYTRLVESGHEEAASNPLFRENLDAHFNRLPPSYGLDVNMEKVEDVVLHQNLLSLAKDPEKCPVYHIRFLEHICTKTDGNDDDELDSILLSGSSNEAADKSFPVSHKRIRGNILDFEPCSKLEDLKLDVRKNSKAMDGRYLMESFSKRQGISHVPVHEVIFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTSDGYSLDVFVVDGWPAEETDGLYEAMEKAVARYEGSWSGSSHSHSAVKKALDAQTKSADWEIDRRLLKIGEKIATGSCGDLYHGLYLGQDVAVKILRSEDLNADLEDEFNQEVAILRKVQHKNVVRFIGASTNSPHLCIVTEYMPGGSLYEYLHKNHCVLQLSQLLKFAIDVCEGMAYLHFNNIIHRDLKTANLLMNTEHVVKVADFGVARFQSQGVMTAETGTYRWMAPEVINHLPYDQKADIFSFAIVLWELITAKVPYDSMTPLQAALGVRQGLRPDLPENVHPKVLDLMQRCWDADPVNRPPFTEIKVELQNLLEEVQKKSCNQVQLFESIKLDYCSSHAKMEMVTKIYEANFAA 580
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16801769 16817110 - CmaCh04G024420.1 Cma04g02442 293523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02442 580 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 11 548 - -
Cma04g02442 580 SMART serkin_6 288 539 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g02442 580 PRINTS Tyrosine kinase catalytic domain signature 362 375 IPR001245 GO:0004672|GO:0006468
Cma04g02442 580 PRINTS Tyrosine kinase catalytic domain signature 506 528 IPR001245 GO:0004672|GO:0006468
Cma04g02442 580 PRINTS Tyrosine kinase catalytic domain signature 444 454 IPR001245 GO:0004672|GO:0006468
Cma04g02442 580 PRINTS Tyrosine kinase catalytic domain signature 463 485 IPR001245 GO:0004672|GO:0006468
Cma04g02442 580 PRINTS Tyrosine kinase catalytic domain signature 399 417 IPR001245 GO:0004672|GO:0006468
Cma04g02442 580 SUPERFAMILY Protein kinase-like (PK-like) 276 538 IPR011009 -
Cma04g02442 580 CDD STKc_MAP3K-like 294 531 - -
Cma04g02442 580 ProSiteProfiles Protein kinase domain profile. 288 539 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g02442 580 Gene3D Transferase(Phosphotransferase) domain 1 366 577 - -
Cma04g02442 580 ProSiteProfiles ACT domain profile. 187 261 IPR002912 -
Cma04g02442 580 Gene3D Phosphorylase Kinase; domain 1 273 365 - -
Cma04g02442 580 Pfam Protein tyrosine and serine/threonine kinase 288 534 IPR001245 GO:0004672|GO:0006468
Cma04g02442 580 ProSitePatterns Serine/Threonine protein kinases active-site signature. 405 417 IPR008271 GO:0004672|GO:0006468
Cma04g02442 580 SUPERFAMILY ACT-like 186 257 IPR045865 -
Cma04g02442 580 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 11 548 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02442 Cma-Chr4:16801769 Cma19g00758 Cma-Chr19:7517998 3.10E-170 dispersed
Cma15g00604 Cma-Chr15:2857022 Cma04g02442 Cma-Chr4:16801769 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68542 PF07714 PK_Tyr_Ser-Thr 5.60E-70 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02442 - - mcha:111011813 994.571