Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02444 ATGATGGATTTGAACTTCACCGCCCGGAAACCGCCGCAGACGGCGACGAGGATGGACATAGAACAGATGCCGGAGACTCCACAGCGTGGCTATCACCATCGCCGTTCTCACTCCGATACATCTTTCCGCTTTGCTAATTTCGACGATCTTCTCCTCTTCGATCATCCCGACCACGATTTATCATCTTCCCTTCGTTCTCCCTCGCCTTCGCCGTCTCCGACGCCGGTGGGCGCTCGTATGGCCCTCGATTCCTTCAATTCAAAGTCCCCTGACGACGCCTCTGCCTCGAAACCTAAAGCTAGTAAGGACACCTCGGCTTCAGACTTCTTTGGTGCTCACTGCCGGAGTTTGTCGATGGATTCAGACTTCTTCGACGGCTTAGGGATCGCCGGAGACGGCAGCGACGGTGAGGTACTTGGCGGGAGGGTAACGGTCGGGGAGAAGAAGATCGGTCGCCATAGGCATAGCAATTCCATGGATGGCGCTTTGACCTCGTCGTTTGAAGCTGAATCCACCGGCGTAATTGATTGCTCCAAGAAGGCTATGGCACCTGATAAACTCGCTGAGCTTGCTTTGATGGACCCTAAAAGAGCTAAGAGGATCCTGGCGAACAGACAATCTGCTGCACGATCCAAGGAGAGGAAAATACGTTACACAAACGAATTAGAGAAGAAGGTGCAGATGCTTCAATCAGAAGCGACTTCCCTTTCTGCACAGGTCACTGTATTACAGAGAGATACCACTGAATTGACTACTGAAAACAGAGAGCTTAAACTAAGGCTGCAGGCCATGGAGCAACAGGCCCAACTCAGAGATGCACTGAACGAGACATTGAAGGAGGAAGTGCAACGGCTGAAGATAGCTGCAGCTCAATTGCCTGTTGCAAATGGCAGCTCGTTCAACATTGGAGGAGGGGCGCTACCCCCTCAATTCCATACTCTCCAGCCATCCTTGCATCAGTTTGGCAACTCTCAGAATCATCAACAGTAA 990 51.82 MMDLNFTARKPPQTATRMDIEQMPETPQRGYHHRRSHSDTSFRFANFDDLLLFDHPDHDLSSSLRSPSPSPSPTPVGARMALDSFNSKSPDDASASKPKASKDTSASDFFGAHCRSLSMDSDFFDGLGIAGDGSDGEVLGGRVTVGEKKIGRHRHSNSMDGALTSSFEAESTGVIDCSKKAMAPDKLAELALMDPKRAKRILANRQSAARSKERKIRYTNELEKKVQMLQSEATSLSAQVTVLQRDTTELTTENRELKLRLQAMEQQAQLRDALNETLKEEVQRLKIAAAQLPVANGSSFNIGGGALPPQFHTLQPSLHQFGNSQNHQQ 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16823509 16825498 - CmaCh04G024440.1 Cma04g02444 293525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02444 329 MobiDBLite consensus disorder prediction 307 329 - -
Cma04g02444 329 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 7 328 - -
Cma04g02444 329 CDD bZIP_plant_RF2 197 246 IPR044759 GO:0003700|GO:0006355
Cma04g02444 329 MobiDBLite consensus disorder prediction 313 329 - -
Cma04g02444 329 MobiDBLite consensus disorder prediction 1 37 - -
Cma04g02444 329 MobiDBLite consensus disorder prediction 87 103 - -
Cma04g02444 329 Pfam bZIP transcription factor 196 254 IPR004827 GO:0003700|GO:0006355
Cma04g02444 329 Gene3D - 195 247 - -
Cma04g02444 329 Coils Coil 219 239 - -
Cma04g02444 329 PANTHER BASIC-LEUCINE ZIPPER (BZIP) TRANSCRIPTION FACTOR FAMILY PROTEIN-RELATED 7 328 - -
Cma04g02444 329 SUPERFAMILY Leucine zipper domain 196 248 IPR046347 GO:0003700|GO:0006355
Cma04g02444 329 Coils Coil 247 291 - -
Cma04g02444 329 SMART brlzneu 192 256 IPR004827 GO:0003700|GO:0006355
Cma04g02444 329 MobiDBLite consensus disorder prediction 59 105 - -
Cma04g02444 329 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 194 257 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02444 Cma-Chr4:16823509 Cma09g01082 Cma-Chr9:5779135 7.02E-105 dispersed
Cma06g01613 Cma-Chr6:10037514 Cma04g02444 Cma-Chr4:16823509 2.09E-54 dispersed
Cma04g02444 Cma-Chr4:16823509 Cma20g00307 Cma-Chr20:1509757 3.06E-62 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34958 PF00170 bZIP_1 3.20E-07 CL0018 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02444 K20557 - csv:101215277 422.55