Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02445 ATGGAGCCCAACAAGGTAAACCTAAGCAATTTGGAGCAACAATCCCCCTCCGACATTGAAACCAAGCAATTCGACTACTCGAAACGTGCCCAATGGCTACGTGCTGCCGTGCTCGGTGCCAACGACGGGCTCGTCTCGACCGCGTCGCTTATGATGGGAGTTGGAGCCGTGAAACAAGACATCAAGGCCATGATCCTGACCGGCTTTGCTGGGTTGGTTGCCGGTGCGTGTAGTATGGCGATCGGCGAGTTCGTGTCGGTTTACTCACAATTAGACATTGAAGTAGCTCAAATGAAGAGAGAAAAGTTACAAAGAGGTAGCCATCTAGATGGGCAAAGCCAAAGCCAAGAGAGCAAAGGTAATGAAAAACTGCCTAACCCACTTCAAGCCGCTATAGCCTCTGCCTTGGCTTTCTCTATTGGAGCAATGGTGCCAGTGTTGGCAGCTTCCTTTATAAGAGAATATAAGGTAAGGCTTGGTGTGGTTGTCGCAGCAGTAACGTTGGCTCTCCTCGTGTTCGGGTCGTTGGGCGCGGTCCTTGGAAAAGCATCACCGGTTAAGTCGTCCATCCGAGTGTTAGTTGGAGGTTGGCTAGCCATGGCTATAACCTTCGGATTAACAAAGCTAATCGGAGTAAGTGGACTCTAA 648 50.31 MEPNKVNLSNLEQQSPSDIETKQFDYSKRAQWLRAAVLGANDGLVSTASLMMGVGAVKQDIKAMILTGFAGLVAGACSMAIGEFVSVYSQLDIEVAQMKREKLQRGSHLDGQSQSQESKGNEKLPNPLQAAIASALAFSIGAMVPVLAASFIREYKVRLGVVVAAVTLALLVFGSLGAVLGKASPVKSSIRVLVGGWLAMAITFGLTKLIGVSGL 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16830843 16831490 + CmaCh04G024450.1 Cma04g02445 293526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02445 215 PANTHER FE(2+)/MN(2+) TRANSPORTER PCL1 13 211 IPR008217 GO:0005384|GO:0030026
Cma04g02445 215 PANTHER VACUOLAR IRON TRANSPORTER HOMOLOG 2.1 13 211 - -
Cma04g02445 215 MobiDBLite consensus disorder prediction 104 124 - -
Cma04g02445 215 MobiDBLite consensus disorder prediction 108 123 - -
Cma04g02445 215 Pfam VIT family 119 207 IPR008217 GO:0005384|GO:0030026
Cma04g02445 215 Pfam VIT family 33 109 IPR008217 GO:0005384|GO:0030026
Cma04g02445 215 CDD Nodulin-21 31 184 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g01081 Cma-Chr9:5748105 Cma04g02445 Cma-Chr4:16830843 4.84E-103 transposed
Cma19g00308 Cma-Chr19:2622933 Cma04g02445 Cma-Chr4:16830843 1.69E-87 transposed
Cma15g00601 Cma-Chr15:2847297 Cma04g02445 Cma-Chr4:16830843 1.85E-131 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02445 K22736 - csv:116402413 335.88