Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02451 ATGTCATTCCGCAGCATACTTCGTGATGTGAGGGATGGATTTGGAAGCTTATCGCGACGTAGTTTTGAACTGAGGCTGTCTAGCCATTCCAGGGGTAAATCTCATGGACCAGTTCATGAGCTTGATGATGAACCTCTGCTAATCCAAACTAGCCGCTGGGCTAGCCTTCCGCCCGAGTTATTATTGGATGTGGTTCAGAGACTAGAAGCAAGCGAGAATACTTGGCCTTCTCGGAGAAATGTTGTTGCTTGTGCTGCTGTATGTAGGTCATGGAGGGACGTGTGCAAAGAAATCGTCAAAAGTCCCGAGTTCTCCGGGAAAATTACATTCCCCATCGCCTTGAAGCAGCCCGGACCTCGTGATGGTACTATTCAATGCTTCATCAAGAGGAACAAATCTAATTTAACCTATCATCTTTATCTTTGCCTTAGTCCTACTTTACTTGTTGAGAATGGGAAATTTCTTCTTTCTGCAAAAAGAACGAGGAGAACTACTTCGACCGAGTATGTTATATCATTGGCTGCGGACGATATATCGAGATCGAGCAATGGTTATATCGGAAAGCTAAGATCAAATTTTCTGGGAACCAAGTTCATTATATATGATACACAGCTTCCTTACAACAGCAACCAAATTCCGACCCTTGGCCGAAGCCGGAGATTCTCCTCCAAAAAGGTCTCTCCAAAGGTACCGGCGGGTAGCTACAGCATAGCACAAATTGCATACGAGTTGAACGTATTAGGTACAAGGGGACCCCGGAGGATGAACTGCACCATGTACTCGATCCCGACTTCATCTCTTGAGCCAGATTCCTCCGTTCCAGGACAGCCCGAGCTCAATCCTCGCCCCCTCGAAGACTCATTTCGAAGCATTTCATTCTCCAAGTCAATCGATCATTCAACTGAGTTCAGCAGTTCCCGCTTCTCCGATGTTGCAGGAATGCTTGCTGATGAAGATGGCGAGAGGAAGGACATAGACATACCCTTGATTCTCCGAAACAAGGCACCAAGATGGCACGAGCAGTTGCAGTGTTGGTGTCTCAACTTCCGGGGGAGGGTGACGGTTGCATCTGTAAAGAATTTTCAGCTGATCGCCGCAACGTCACCTGATGCAGAAGTGTCTGTACCATCACAGCCACCTCCCCAGCCCGCCCAACCTATGCATTCCGACCACGACAAGATCATTCTGCAGTTCGGGAAGGTCGGTAAGGACATATTTACGATGGATTATCGATACCCGCTGTCTGCATTCCAGGCTTTTGCTATATGTCTCAGCAGCTTTGACACCAAATTGGCATGTGAATAG 1305 47.51 MSFRSILRDVRDGFGSLSRRSFELRLSSHSRGKSHGPVHELDDEPLLIQTSRWASLPPELLLDVVQRLEASENTWPSRRNVVACAAVCRSWRDVCKEIVKSPEFSGKITFPIALKQPGPRDGTIQCFIKRNKSNLTYHLYLCLSPTLLVENGKFLLSAKRTRRTTSTEYVISLAADDISRSSNGYIGKLRSNFLGTKFIIYDTQLPYNSNQIPTLGRSRRFSSKKVSPKVPAGSYSIAQIAYELNVLGTRGPRRMNCTMYSIPTSSLEPDSSVPGQPELNPRPLEDSFRSISFSKSIDHSTEFSSSRFSDVAGMLADEDGERKDIDIPLILRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATSPDAEVSVPSQPPPQPAQPMHSDHDKIILQFGKVGKDIFTMDYRYPLSAFQAFAICLSSFDTKLACE 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16853307 16856394 + CmaCh04G024510.1 Cma04g02451 293532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02451 434 SUPERFAMILY Tubby C-terminal domain-like 102 434 IPR025659 -
Cma04g02451 434 Gene3D - 48 100 - -
Cma04g02451 434 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Cma04g02451 434 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Cma04g02451 434 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Cma04g02451 434 PRINTS Tubby superfamily signature 331 348 IPR000007 -
Cma04g02451 434 PRINTS Tubby superfamily signature 349 365 IPR000007 -
Cma04g02451 434 PRINTS Tubby superfamily signature 391 410 IPR000007 -
Cma04g02451 434 PRINTS Tubby superfamily signature 412 434 IPR000007 -
Cma04g02451 434 Pfam F-box domain 53 99 IPR001810 GO:0005515
Cma04g02451 434 Gene3D Tubby Protein; Chain A 113 428 IPR025659 -
Cma04g02451 434 ProSitePatterns Tub family signature 1. 349 362 IPR018066 -
Cma04g02451 434 Pfam Tub family 114 429 IPR000007 -
Cma04g02451 434 ProSitePatterns Tub family signature 2. 419 434 IPR018066 -
Cma04g02451 434 PANTHER TUBBY-RELATED 1 434 - -
Cma04g02451 434 SUPERFAMILY F-box domain 48 96 IPR036047 GO:0005515
Cma04g02451 434 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 1 434 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01013 Cma-Chr1:7423924 Cma04g02451 Cma-Chr4:16853307 0 dispersed
Cma04g02451 Cma-Chr4:16853307 Cma16g00365 Cma-Chr16:1736649 0 dispersed
Cma15g00596 Cma-Chr15:2826436 Cma04g02451 Cma-Chr4:16853307 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34960 PF01167 Tub 1.60E-114 CL0395 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02451 K19600 - csv:101203074 796.578