Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02452 ATGGCATCATCCAAGCTCTGGGCATCTTCGAGTTCGCGAAATTCGGATCTATCTCGAGGTTCTTCTTCTTCTTCCTCTTCTGCTTCTCTTTTAAACCCTCAATTTCTCTCCAATAGTTCCAGGAATAATGACAACAACCGGACTCGCAATCGAAGCCATAGTCTTAGCTCGATGAATCTCGATGGCTTAGTTCGTGATGGGTATGATTCTAATCCCACGGAGTCTATTCTCTTAGATGCGCAGATCACTCTTGTTGATTACCCTATCCCCTCTACGTTTCCCATGAATGCGACTAATTCCTCTGCCGTCATTGATAGTTATCACAATACTTCCTCCGGCGCGCCCAAGACTGTGGATGATGTGTGGAGGGAGATTGTATCGGGTGAGAGGAAGGAGTTGAAGGAGGAGGTTACTGATGAGTTGATAACCCTCGAGGATTTTCTTGTGAAAACTGGAGCTGCGCCTGTCGAGGATGTCAAATTGCCGCAGACGGAGAGGCTGAGTGGAGGGATTTTTTCGTTTGATTCAATTCCAGGCAGCTCGTTTCAGGCAGTGGAAAAGGTTGAAGGATCCATTGTGGGATTTGGGAGTGGGGTTGATTTGGTTGGCAGTGGAGGAAGTGTGGGGAGAGGGAAAAGAGGGCGAGCTGCCTTGGAGCCCTTGGATAAGGCTGCTGAGCAAAGACAGAGGAGGATGATCAAGAATAGGGAGTCTGCTGCAAGGTCTAGGGAAAGGAAGCAGGCTTATCAAGTGGAGTTAGAGTCGTTAGTTGCAAAATTAGAGGAGGAGAACGAGCGGCTTTTGAGAGAAAAGGCCGAGAGGAGTAAGGAAAGGCATAAGCAGCTAATGGAAAAGGTGATTCCTGTGGTTGAAAAGCGACGACCCCCACGAGGGATTCGGCGAGTGAATTCCATGAAATGGTGA 924 48.38 MASSKLWASSSSRNSDLSRGSSSSSSSASLLNPQFLSNSSRNNDNNRTRNRSHSLSSMNLDGLVRDGYDSNPTESILLDAQITLVDYPIPSTFPMNATNSSAVIDSYHNTSSGAPKTVDDVWREIVSGERKELKEEVTDELITLEDFLVKTGAAPVEDVKLPQTERLSGGIFSFDSIPGSSFQAVEKVEGSIVGFGSGVDLVGSGGSVGRGKRGRAALEPLDKAAEQRQRRMIKNRESAARSRERKQAYQVELESLVAKLEEENERLLREKAERSKERHKQLMEKVIPVVEKRRPPRGIRRVNSMKW 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16862102 16866253 + CmaCh04G024520.1 Cma04g02452 293533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02452 307 PANTHER BASIC LEUCINE ZIPPER TRANSCRIPTION FACTOR 2 306 - -
Cma04g02452 307 Pfam bZIP transcription factor 225 285 IPR004827 GO:0003700|GO:0006355
Cma04g02452 307 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 230 245 IPR004827 GO:0003700|GO:0006355
Cma04g02452 307 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 225 277 IPR004827 GO:0003700|GO:0006355
Cma04g02452 307 Gene3D - 225 285 - -
Cma04g02452 307 SUPERFAMILY Leucine zipper domain 228 278 IPR046347 GO:0003700|GO:0006355
Cma04g02452 307 MobiDBLite consensus disorder prediction 1 59 - -
Cma04g02452 307 CDD bZIP_plant_BZIP46 227 259 - -
Cma04g02452 307 Coils Coil 239 285 - -
Cma04g02452 307 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 2 306 IPR043452 GO:0003700|GO:0045893
Cma04g02452 307 SMART brlzneu 223 287 IPR004827 GO:0003700|GO:0006355
Cma04g02452 307 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02452 Cma-Chr4:16862102 Cma04g02495 Cma-Chr4:17095439 4.12E-23 dispersed
Cma01g00973 Cma-Chr1:6638641 Cma04g02452 Cma-Chr4:16862102 1.91E-37 transposed
Cma11g01586 Cma-Chr11:10396679 Cma04g02452 Cma-Chr4:16862102 1.50E-47 transposed
Cma15g00593 Cma-Chr15:2808330 Cma04g02452 Cma-Chr4:16862102 6.48E-134 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34961 PF00170 bZIP_1 3.30E-13 CL0018 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02452 K14432 - csv:101223110 365.54