Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02466 ATGGAGGGAGCAATCAATGGATTTCTTAAACGGTATCTATTGTACTTCATGGCTATGTGCTTAACCTTAACAATGGAGAGTTCATTAGTTGCTTCTCTATCTCCCGATGGAGAAGCGCTTCTCTCTCTCATATCTGCTGCTGGTCCTTCTGTTCTTGCCTCTTGGAATCCATCTAGCCAAAACCCTTGTTCTTGGGAAGGAATCACTTGTTCTCCTCAGAACAGAGTCATTTCATTATCTCTTCCTAAAACGTTCTTAAACCTCTCTGTTTTGCCTCCTGAGTTGTCTTCTTTATCTTCTCTGCAACTTCTTAATCTCTCTTCCACCAATGTATCTGGCTCAATCCCCTCCTCTTTTGGCCTACTCACTCATCTTCGCCTGTTGGACCTTTCATCCAACGATCTCTATGGTCCAATTCCTCCTCAGCTTGGTTCTCTTTCTTCACTTCAATTCCTTTTCCTGAATTTCAATAGACTTTCTGGTAAGATTCCTCCGCAGCTTGCTAATCTGGCTTCTCTGCAAATTCTTTGCCTCCAAGACAATTTGTTTAATGGCTCTATACCATCACAATTTGGTTCTTTGCTGTCTCTTCAAGAGTTTCGAATCGGAGGGAATCCGTTTCTTTCTGGAGAGATTCCGTCACAGATGGGGCTGCTTACTAATCTCACTACATTCGGGGCAGCGGCTACGGCGCTTTCGGGGGCTATACCGTCTACATTTGGGAACTTAATCAACCTCCAAACTTTGTCACTCTATGATACTGAGATATCTGGTTCAATACCTCCTGAGTTGGGGCTTTGTTCTGAGCTAAGGGATTTGTATTTGCATATGAACAAGCTCAATGGTTATATTCCTCCTCAGCTGGGTAGGTTGCAGAAGCTTACTAGTTTGTTTCTCTGGGGCAATGCTCTATCTGGGTCGATACCGTCGGAAATTTCAAATTGTTCGGCTCTAGTTGTTTTTGATGCGTCGGAGAATGATCTTTCTGGTGAAATCCCAAGTGATTTAGGGAAGTTGGTTGTTCTTGAACAGTTTCATGTATCGGACAATTCGATCTCGGGTGCGATACCGTGGCAGCTAGGCAACTGCACAAGCTTGACTGCCCTTCAGCTTGATAATAATCAACTATCAGGTGTAATTCCACCAGAACTTGGCAATTTGAGATCCCTGCAAAGCTTTTTCTTATGGGGGAATTCTGTGTCAGGATCCATACCATCTTCCTTTGGCAACTGCACTGAGTTATATGCCTTTGATCTTTCAAGAAACAAGCTCACTGGGGTAATCCCAGAAGAAATTTTCAGCTTGAAGAAGCTGAGCAAGCTTTTGCTCCTCGGAAATTCTTTATCTGGCGGGTTGCCTCAAAGCGTCGCAAATTGTCAATCATTAGTGAGGTTGAGGCTTGGAGAAAACCAGCTTTCAGGCCAGATTCCGAAGGAGGTAGGACGGTTGCAAAATCTCGTCTTTCTCGACTTGTATATGAATCATTTTTCGGGTGGCCTTCCGCCTGAGATTGCTAATATTACAGTTCTTGAGCTACTTGATGTGCATAATAACTATATAACTGGTGAAATTCCTCCCCAGCTTGGGGAGTTGGTGAACTTGGAGCAGCTCGATCTCAGTCGAAACAGCTTCACCGGTGAAATTCCTGAGAGCTTTGGAAACTTCAGTTATTTGAATAAACTTATTCTCAACAATAATCTACTGACAGGGTCAATTCCGAAGTCCATCAAGAACCTGGAGAAACTAACTCTACTTGATTTGAGTTACAACAGTCTCTCTGGTACCATACCACCAGAAATTGGTTACATGAAGAGCTTGTCGATCAGTTTGGACTTGAGCTCGAATGGGCTTACCGGAGAAATTCCCGAGGCGATGTCCAGTTTGACACAGTTACAATCACTTGATCTTTCCAATAACATGCTTTCTGGAAACGTTAAAGTGTTGGGTCTCTTGACTAGTCTCACTTCTCTCAATATCTCCCACAACAATTTCTCAGGTCCTATGCCTGTAACGCCATTTTTTAAAACGCTACCACGAGATGCTTATGATCAGAATGTGAATCTTTGTAAATCACTCAATGGATTTACTTGTTCTTCGAGTTCGATGCGAAGAACTGGCTTAAAGTCTGTAAAAGCTGCTGCTTTGATTACCATCATTCTTGCTGCAGTTCTCATCCTAATTTTTGCATTGTGGATAGTAGTTTCACGAAATCGCAAGTACATGGCAGAGAAACATTCCAGGACGTCGTCCCCTGCATCGGCTGCCGAGGATTTCTCTTATCCATGGACCTTCATCCCATTTCAGAAGCTCAATTTTACCATAGATAACATCTTGGAATCCATGAAGTACGAAAACATAATTGGAAAAGGTTGTTCTGGGGTTGTTTATAAAGCAGATATGCCAAATGGTGAATTAGTTGCAGTGAAGAAACTATGGAAAACGAAGCAGGATGAAGAAGCAGTTGACTCGTGTGCAGCGGAGATTCAAATTCTCGGGCATATTCGACATCGAAACATAGTGAAGCTCATTGGTTATTGCTCTAATAGAAGCGTCAAGCTACTTCTCTACAACTACATTTCCAATGGTAATCTACAACAACTCTTGCAAGGAAACAGGAATTTGGACTGGGAAACTAGGTATAAAATTGCAGTTGGGACAGCACAGGGTCTAGCTTATCTTCATCATGATTGTGTGCCTGCAATTCTTCACAGAGATGTCAAGTGCAATAACATACTTCTAGACTCCAAGTTTGAAGCTTATCTAGCAGATTTCGGCCTAGCAAAGTTGATGAATGCTCCAAATTATCACCACGCAATTTCGAGAGTAGCAGGTTCTTACGGTTATATAGCCCCAGAATACGGATATACCATGAATATAACCGAGAAGAGTGATGTCTATAGCTATGGAGTTGTTCTACTAGAGATACTAAGTGGCCGTAGCGCAGTTGAGGCACGAGTTGGAGACGGTCTTCACATTGTTGAATGGGTGAAGAAGAAGATGGCAAGCTTCGAGCCTGCTATATCGATACTCGACGCAAAGCTCCAAGGCTTACCAGATCAGATGGTTCAAGAAATGCTTCAAACACTTGGTATAGCCATGTTTTGTGTTAACTCCTCTCCAGCAGAAAGGCCAACAATGAAGGAAGTGGTAGCATTATTGATGGAGGTGAAGAGTCCTCCAGAAGAATGGGGCAAAACCTCCCAACCTCTGATAAAGCAGTCCTCAAATTTAAGTTCAAATAATTCTTGCTTACCCACAAGAAAATTGGGGTGA 3273 42.74 MEGAINGFLKRYLLYFMAMCLTLTMESSLVASLSPDGEALLSLISAAGPSVLASWNPSSQNPCSWEGITCSPQNRVISLSLPKTFLNLSVLPPELSSLSSLQLLNLSSTNVSGSIPSSFGLLTHLRLLDLSSNDLYGPIPPQLGSLSSLQFLFLNFNRLSGKIPPQLANLASLQILCLQDNLFNGSIPSQFGSLLSLQEFRIGGNPFLSGEIPSQMGLLTNLTTFGAAATALSGAIPSTFGNLINLQTLSLYDTEISGSIPPELGLCSELRDLYLHMNKLNGYIPPQLGRLQKLTSLFLWGNALSGSIPSEISNCSALVVFDASENDLSGEIPSDLGKLVVLEQFHVSDNSISGAIPWQLGNCTSLTALQLDNNQLSGVIPPELGNLRSLQSFFLWGNSVSGSIPSSFGNCTELYAFDLSRNKLTGVIPEEIFSLKKLSKLLLLGNSLSGGLPQSVANCQSLVRLRLGENQLSGQIPKEVGRLQNLVFLDLYMNHFSGGLPPEIANITVLELLDVHNNYITGEIPPQLGELVNLEQLDLSRNSFTGEIPESFGNFSYLNKLILNNNLLTGSIPKSIKNLEKLTLLDLSYNSLSGTIPPEIGYMKSLSISLDLSSNGLTGEIPEAMSSLTQLQSLDLSNNMLSGNVKVLGLLTSLTSLNISHNNFSGPMPVTPFFKTLPRDAYDQNVNLCKSLNGFTCSSSSMRRTGLKSVKAAALITIILAAVLILIFALWIVVSRNRKYMAEKHSRTSSPASAAEDFSYPWTFIPFQKLNFTIDNILESMKYENIIGKGCSGVVYKADMPNGELVAVKKLWKTKQDEEAVDSCAAEIQILGHIRHRNIVKLIGYCSNRSVKLLLYNYISNGNLQQLLQGNRNLDWETRYKIAVGTAQGLAYLHHDCVPAILHRDVKCNNILLDSKFEAYLADFGLAKLMNAPNYHHAISRVAGSYGYIAPEYGYTMNITEKSDVYSYGVVLLEILSGRSAVEARVGDGLHIVEWVKKKMASFEPAISILDAKLQGLPDQMVQEMLQTLGIAMFCVNSSPAERPTMKEVVALLMEVKSPPEEWGKTSQPLIKQSSNLSSNNSCLPTRKLG 1090
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16959264 16962700 + CmaCh04G024660.1 Cma04g02466 293547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02466 1090 SUPERFAMILY L domain-like 51 401 - -
Cma04g02466 1090 Gene3D Ribonuclease Inhibitor 381 447 IPR032675 -
Cma04g02466 1090 SUPERFAMILY RNI-like 356 667 - -
Cma04g02466 1090 Pfam Leucine rich repeat N-terminal domain 34 71 IPR013210 -
Cma04g02466 1090 Gene3D Transferase(Phosphotransferase) domain 1 859 1073 - -
Cma04g02466 1090 SMART LRR_typ_2 579 603 IPR003591 -
Cma04g02466 1090 SMART LRR_typ_2 483 506 IPR003591 -
Cma04g02466 1090 SMART LRR_typ_2 651 684 IPR003591 -
Cma04g02466 1090 SMART LRR_typ_2 122 145 IPR003591 -
Cma04g02466 1090 SMART LRR_typ_2 146 169 IPR003591 -
Cma04g02466 1090 SMART LRR_typ_2 363 387 IPR003591 -
Cma04g02466 1090 SMART LRR_typ_2 243 267 IPR003591 -
Cma04g02466 1090 SMART LRR_typ_2 98 121 IPR003591 -
Cma04g02466 1090 SMART LRR_typ_2 531 554 IPR003591 -
Cma04g02466 1090 SMART LRR_typ_2 628 650 IPR003591 -
Cma04g02466 1090 SMART LRR_typ_2 170 194 IPR003591 -
Cma04g02466 1090 SMART LRR_typ_2 291 315 IPR003591 -
Cma04g02466 1090 PRINTS Leucine-rich repeat signature 582 595 - -
Cma04g02466 1090 PRINTS Leucine-rich repeat signature 628 641 - -
Cma04g02466 1090 SMART serkin_6 781 1057 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g02466 1090 Pfam Protein kinase domain 784 1050 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g02466 1090 MobiDBLite consensus disorder prediction 1067 1090 - -
Cma04g02466 1090 ProSitePatterns Serine/Threonine protein kinases active-site signature. 901 913 IPR008271 GO:0004672|GO:0006468
Cma04g02466 1090 ProSitePatterns Protein kinases ATP-binding region signature. 787 810 IPR017441 GO:0005524
Cma04g02466 1090 Pfam Leucine rich repeat 609 664 IPR001611 GO:0005515
Cma04g02466 1090 Pfam Leucine rich repeat 388 448 IPR001611 GO:0005515
Cma04g02466 1090 Pfam Leucine rich repeat 533 592 IPR001611 GO:0005515
Cma04g02466 1090 Gene3D Phosphorylase Kinase; domain 1 743 858 - -
Cma04g02466 1090 PANTHER - 14 1074 - -
Cma04g02466 1090 SUPERFAMILY Protein kinase-like (PK-like) 765 1054 IPR011009 -
Cma04g02466 1090 PANTHER UNNAMED PRODUCT 14 1074 - -
Cma04g02466 1090 MobiDBLite consensus disorder prediction 1060 1090 - -
Cma04g02466 1090 ProSiteProfiles Protein kinase domain profile. 781 1071 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g02466 1090 Gene3D Ribonuclease Inhibitor 448 699 IPR032675 -
Cma04g02466 1090 Gene3D Ribonuclease Inhibitor 38 187 IPR032675 -
Cma04g02466 1090 Gene3D Ribonuclease Inhibitor 188 283 IPR032675 -
Cma04g02466 1090 Gene3D Ribonuclease Inhibitor 284 380 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02466 Cma-Chr4:16959264 Cma17g00118 Cma-Chr17:586539 0 dispersed
Cma15g00569 Cma-Chr15:2664219 Cma04g02466 Cma-Chr4:16959264 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68544 PF00069 Pkinase 6.00E-46 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02466 - - cmax:111487174 2034.22