Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02473 ATGAAAACTCCAGTTACGGCACCGGCGACTGTTGCTACAGTTCAAACGGCGGCGATTCCTCCGACTGACTCTGTCGCCACTGGAGGCGGATTCTTGAATTCTTCATTGTATGTTGGCGATCTGGACCCGACTGTGAACGAGGGACAGCTTTTGGAACTGTTTAGCCAAGTGGCTCAGGTTGTCTCCATTAGGGTTTGCAGGGATCAGACACGCAGGCGATCGCTTGGATACGCTTATGTTAATTTCAGCAATCATCAGGAAGCTTCCAGCGCCTTGGAACATTTGAATTTCACCCTCATTAATGGGAAGCCTATCAGGATTATGATGTCGAATCGAAATCCTAGCATCCGAAAAAGTGGCCAAGCAAATGTTTTCATCAAAAATCTGGACGCATCAATTGATAACAAGGCATTGTATGATACATTTGCTACCTTCGGTACTATTCTTTCGTGTAAAGTTGCCATTGATAGCAATGGTCAATCAAAAGGGTATGGATTTGTGCAATTTGAAAATGAGGAAGCTGCAAACATTGCTATAGTTAGATTGAATGGCATGCTGCTCAATGATAAGCAAGTTTTTGTTGGACATTTTATTCGACGTCAGGAAAGGATTCAGGCAAATGGATCGACAGTTACTAATGTTTATGTGAAGAATTTACTGGAAACTACCACAGCTGATGACCTAAAAAATCTTTTTGCTACACATGGTGCCATTACTAGTGCAGCTGTCATGACAGATTCGAACAGGAAGTCCAAATGTTTTGGCTTTGTGAATTTCCAGAGCCCAGACTCTGCTGCTGCTGCAGTTGAAACGTTGAATGGTACCGTCCTTGGTGATGACAAGGTTCTGTATGTAGCCAGGGCTCAGAAGAAAGCAGAAAGGGAGGCCGAGTTGAAAGCAAAATTTGTACAGGAACGAAAGAGTAGATTTGAAAAATTACAAGGTGCTAATTTGTATATAAAAAACCTTGATGACCAAATTGATGATGAGAAGCTCAAAGAGTTATTCTCTGAGTATGGAACAATCACATCATGCAAGGTTATGCTTGACCAAAATGGACTGAGCAAGGGATCTGGTTTTGTAGCATTTTCTTCACCAGATGAAGCAACGAGAGCCTTGAATGAATTGAATGGAAAAATGAAGGGAAGGAAACCTCTGTATGTGGCTGTTGCCCAGCACAAAGAAGAGAGAAAGGCTCGGCTCCAGGCTCAATTTGCTCAAGCCAGAGCAGCTGGCGCAATATCGTCTTTGCCTTCAGGAATTCCAGGGTTTCATCCAGGTGCACCACGACTTGCACCTCAGCAGCTGTATTATGGTCAGGGAAATCCCGGGCTGGTGCCCTCACAGCCTGCTGGATACGGCTTCCAGCCTCAACTCATGACCGGAATGCGACCTGGTATGGGTCCAAACTTCATCATGCCTTACCAGTTTCAGAGGCAAGGACAGCCCGGGCCACGTCCTGGGATGAGGCGAGGTGGAAATTCGCAACCATTTAATAAGCAGCAGCAGTCACTGCTCCGTGGCACTGGACAAGGTTTTAGTTACATGAACAATGTACGGAATGGATTAAAGCCACCCGTCCTGCCCCCTGTTCTGCCTCAAGCTCTTGTTGGTCCAGTGATGCCTCTGACTTTTGATACTTCTGGAGTGTCTAGCTCCCCCATTGACATCCAACGATCAAGGGTTGTGCCTTCATCAACACTCGCTTCTGCATTAGCCTCTGCTTCACCCGAAAACCAACGTATGATGCTCGGCGAGCAGTTGTATCCACTTGTGGAATGTCTCGAGCCAGGTCATGCAGCAAAGGTTACTGGAATGTTGCTGGAAATGGACCAACCAGAGGTCCTTCATCTCATCGAGTCACCAGATGACTTGAATAGTAAGGTGGCTGAGGCAATGGAAGTCCTCCACAAAGCTTCCTTCGAACCCGAGCTATCTGATCAGCTCGGTGCATTGGCCCTGGCCAAATGA 1971 46.37 MKTPVTAPATVATVQTAAIPPTDSVATGGGFLNSSLYVGDLDPTVNEGQLLELFSQVAQVVSIRVCRDQTRRRSLGYAYVNFSNHQEASSALEHLNFTLINGKPIRIMMSNRNPSIRKSGQANVFIKNLDASIDNKALYDTFATFGTILSCKVAIDSNGQSKGYGFVQFENEEAANIAIVRLNGMLLNDKQVFVGHFIRRQERIQANGSTVTNVYVKNLLETTTADDLKNLFATHGAITSAAVMTDSNRKSKCFGFVNFQSPDSAAAAVETLNGTVLGDDKVLYVARAQKKAEREAELKAKFVQERKSRFEKLQGANLYIKNLDDQIDDEKLKELFSEYGTITSCKVMLDQNGLSKGSGFVAFSSPDEATRALNELNGKMKGRKPLYVAVAQHKEERKARLQAQFAQARAAGAISSLPSGIPGFHPGAPRLAPQQLYYGQGNPGLVPSQPAGYGFQPQLMTGMRPGMGPNFIMPYQFQRQGQPGPRPGMRRGGNSQPFNKQQQSLLRGTGQGFSYMNNVRNGLKPPVLPPVLPQALVGPVMPLTFDTSGVSSSPIDIQRSRVVPSSTLASALASASPENQRMMLGEQLYPLVECLEPGHAAKVTGMLLEMDQPEVLHLIESPDDLNSKVAEAMEVLHKASFEPELSDQLGALALAK 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16978739 16982425 - CmaCh04G024730.1 Cma04g02473 293554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02473 656 CDD RRM2_I_PABPs 120 196 IPR045305 -
Cma04g02473 656 Coils Coil 391 411 - -
Cma04g02473 656 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 112 IPR000504 GO:0003723
Cma04g02473 656 SUPERFAMILY PABC (PABP) domain 466 639 IPR036053 GO:0003723
Cma04g02473 656 SMART poly_2 576 639 IPR002004 GO:0003723
Cma04g02473 656 CDD RRM4_I_PABPs 315 392 - -
Cma04g02473 656 Pfam Poly-adenylate binding protein, unique domain 572 636 IPR002004 GO:0003723
Cma04g02473 656 Gene3D - 32 122 IPR012677 -
Cma04g02473 656 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 318 386 IPR000504 GO:0003723
Cma04g02473 656 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 214 281 IPR000504 GO:0003723
Cma04g02473 656 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 106 IPR000504 GO:0003723
Cma04g02473 656 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 124 191 IPR000504 GO:0003723
Cma04g02473 656 MobiDBLite consensus disorder prediction 479 504 - -
Cma04g02473 656 Gene3D - 198 297 IPR012677 -
Cma04g02473 656 SMART rrm1_1 213 286 IPR000504 GO:0003723
Cma04g02473 656 SMART rrm1_1 317 389 IPR000504 GO:0003723
Cma04g02473 656 SMART rrm1_1 123 195 IPR000504 GO:0003723
Cma04g02473 656 SMART rrm1_1 35 108 IPR000504 GO:0003723
Cma04g02473 656 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 212 290 IPR000504 GO:0003723
Cma04g02473 656 Gene3D - 123 196 IPR012677 -
Cma04g02473 656 Coils Coil 656 656 - -
Cma04g02473 656 PANTHER RNA BINDING PROTEIN 32 644 - -
Cma04g02473 656 PANTHER POLYADENYLATE-BINDING PROTEIN 32 644 - -
Cma04g02473 656 SUPERFAMILY RNA-binding domain, RBD 34 201 IPR035979 GO:0003676
Cma04g02473 656 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 564 641 IPR002004 GO:0003723
Cma04g02473 656 CDD RRM1_I_PABPs 35 114 - -
Cma04g02473 656 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 316 393 IPR000504 GO:0003723
Cma04g02473 656 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 122 194 IPR000504 GO:0003723
Cma04g02473 656 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 34 636 IPR006515 GO:0003723
Cma04g02473 656 SUPERFAMILY RNA-binding domain, RBD 212 394 IPR035979 GO:0003676
Cma04g02473 656 Gene3D - 298 402 IPR012677 -
Cma04g02473 656 Gene3D - 560 640 - -
Cma04g02473 656 SMART rrm2_1 35 108 IPR003954 GO:0003676
Cma04g02473 656 SMART rrm2_1 213 285 IPR003954 GO:0003676
Cma04g02473 656 SMART rrm2_1 123 195 IPR003954 GO:0003676
Cma04g02473 656 SMART rrm2_1 317 388 IPR003954 GO:0003676
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02473 Cma-Chr4:16978739 Cma19g00596 Cma-Chr19:6565911 0 dispersed
Cma15g00568 Cma-Chr15:2660471 Cma04g02473 Cma-Chr4:16978739 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02473 K13126 - csv:101219081 1011.91