Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02480 ATGCTCTTGAAGCCATTCAACACCGTCCCCGTCATCTTCATGTTTGCTCTCGCATTCTTCATCCTCCTCTTAACTGGTTTCCTCGAATTTCCCCCGGCGTTCACTTCCATCGTACCGCTTACCGACGATCTGAATCTCTCAGCCGTTGAGTTTGTATCTGAACCTTTCACTGATTTGATCACCTCTTTTAATAAATGGGATTCTCAGGTCGGTTGTGATCGGTTTCGGGAGAAAATTGGCGGCGGTTTGGGTAATCGGTCTTCGTCTTCTTCGCTGCAGCTAGTCGGCGCCGATTCTAGTGGTGATTGTCGGGCTCTGAAATTGGTTCATGTTGCTGTGTTGGTGAAAGGATGGACATGGATTCCGGATAATTTAGACAATTTGTATTCGTGTTCTTGCGGATTGAGCTGTCTTTGGACTAAGTCTTCTGTTCTTGCTGATAAACCTGACGCTTTGTTCTTCGAGACCAGTACGCCTCCGAGACAGAGGCGCAGGGGAGATCCTCTTCGTGTATATATGGATCTCGAGGCTGGTCGGAAGCGCTCGGGTTTTGAGGATTTATTTGTTAGTTATCATGCAGAAGACGACGTTCAGTCAACTTATGCAGGAGCACTCTTTCACAATGGTCGAAACTATCATGTATCGTCTTCTAAAAACAATGATACGCTCGTTTATTGGTCATCGTCCCGCTGTCTTCCCGTAAGAAATCGGCTAGCTGAAAAGCTTCTAACTTTGCTGCCTCACCATTCATTTGGCAAGTGCTTGAACAATGTAGGCGGACTGGATGTGGCTCTCTCTATGTACCCTGAATGTGCAAATGATGGCAGTGTCACCCCAAAATGGTGGGATCATTTGCATTGCGCAATGTCTCATTACAAATTTGTTCTAGCAATCGAAAACACGATGACCGAAAGTTACGTGACAGAGAAGCTATTTTATGCACTAGACTCTGGTTCGGTCCCGATCTATTTTGGTGCCCCAAATGTCTGGGACTTTGTCCCTCCACATTCTATAATTGATGGGTCTAAATTCAGCTCGTTAGAAGAGTTAGCTTCTTATGTAAAGCGACTTGCCAATGACCCGGTAGCTTATGCCGAGTACCATGCTTGGAGACGATGCCGCACGTTGGGTAACTATAGAATGACCCGTGCTGCAAGCCTCGACACTCTGCCGTGCCGAGTATGTGATGCTGTGAGCAGAAAGGGTGGTAGAAATGCTTGA 1221 46.68 MLLKPFNTVPVIFMFALAFFILLLTGFLEFPPAFTSIVPLTDDLNLSAVEFVSEPFTDLITSFNKWDSQVGCDRFREKIGGGLGNRSSSSSLQLVGADSSGDCRALKLVHVAVLVKGWTWIPDNLDNLYSCSCGLSCLWTKSSVLADKPDALFFETSTPPRQRRRGDPLRVYMDLEAGRKRSGFEDLFVSYHAEDDVQSTYAGALFHNGRNYHVSSSKNNDTLVYWSSSRCLPVRNRLAEKLLTLLPHHSFGKCLNNVGGLDVALSMYPECANDGSVTPKWWDHLHCAMSHYKFVLAIENTMTESYVTEKLFYALDSGSVPIYFGAPNVWDFVPPHSIIDGSKFSSLEELASYVKRLANDPVAYAEYHAWRRCRTLGNYRMTRAASLDTLPCRVCDAVSRKGGRNA 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17036885 17039875 - CmaCh04G024800.1 Cma04g02480 293561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02480 406 PIRSF FucT_plant 1 406 IPR017177 -
Cma04g02480 406 PANTHER ALPHA-(1,4)-FUCOSYLTRANSFERASE 15 406 - -
Cma04g02480 406 Pfam Glycosyltransferase family 10 (fucosyltransferase) C-term 219 401 IPR001503 GO:0006486|GO:0008417|GO:0016020
Cma04g02480 406 PANTHER ALPHA- 1,3 -FUCOSYLTRANSFERASE 15 406 IPR001503 GO:0006486|GO:0008417|GO:0016020
Cma04g02480 406 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 103 400 - -
Cma04g02480 406 Gene3D - 171 380 IPR038577 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02480 Cma-Chr4:17036885 Cma16g00355 Cma-Chr16:1681365 6.58E-15 dispersed
Cma15g00557 Cma-Chr15:2596576 Cma04g02480 Cma-Chr4:17036885 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02480 K14412 - csv:101216230 733.021