Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02482 ATGGAGAAGTTCCATGTTTATTCCCTGTTCATCTTTATTTTGGTTTCGGGTCTTTTTGTTCCAACTCTGTCTCTTCCAATCGAGACTCGAGCATTGCTTCGTTTCAAAGAGAATCTCAAAGACCCGGCGGGTTTTCTTCATTCTTGGATTGATTCTAAATCCCCTTGTGGGTTCTCCGGTGTTACTTGCGACCGGTTTTCTGGGAAAGTTGTTGAGATTTCGTTGGAAAACAAGTCGCTTTCTGGTGAGATTTCTCCATCTATTTCTGTTCTACAAAGTCTCACAACACTTTCATTGGCCTCAAACCACATTTATGGGGTACTTCCTTATCAACTGATGAACTGTAGCAATCTTAAAGTACTGAATCTCACTGACAACGAAATGGTTGGGAGAATTCCCGATCTTTCTCAGCTGAGAAATTTGGAGGCTTTTGATCTATCTATCAACTTTTTCTCCGGTCAATTCCCATTCTGGGTTGGGAATTTAACTGGATTGGTATCTCTTGGTCTGGGTGAAAATGAGTTTGAGACAGGTGAAATACCAGAATCTATTGGAAATTTGAAGAACTTAACTTGGCTATATCTAGCCAATGCTTATTTGAGAGGAGAAATTCCAGAGTCTCTGTTTGAATTGAAGGCATTACAGACATTGGATCTTTCAAGGAACAAAATTTCTGGTAAACTCTCCAAGTCAATATCCAAGTTGAAGAATCTGAATAAGCTTGAACTTTTTGTGAATTGTTTGACTGGAGAAATCCCACTAGAGATTTCGAACCTTACCCTTCTGCAAGAAATCGATATTTCGGCAAATAATTTCTACGGGGAGTTGCCTGAAGAGGTTGGGAACCTGAGGAATTTGGTGGTTTTTCAGTCGTATGAAAACAACTTCTCTGGAAAGCTTCCTGAAGGGTTTGGAAATATGCAGAATCTTACTGCATTTTCAATCTATAGGAACAACTTTTCTGGGGAATTTCCTGTCAATTTCGGCAGATTTGCGCCCCTCGACAGTATTGACATATCGGAGAACCAATTTTCAGGTCATTTCCCCAAGTTCTTGTGTGAGAATGGGAAGTTGCAGTTCTTACTTGCTCTGGGAAATAGATTTTCAGGCGAGCTTCCACTTTCTCTAGCTGAGTGCAAATCACTGCAAAGGTTCAGAATAAGTAACAATCAAATGTCTGGCAGGATTCCAGATGGGGTTTGGGCTCTTCCTAATGCAAAAATGATTGATTTTAGTGACAATGAATTTACTGGAGTTATATCCCCAAACATTGGTTTATCAACTAGCTTGAGCCAATTGATTTTGCTAAACAATAAGTTTTCAGGTAAGCTTCCATCAGAGCTTGGCAAGTTGACAAATTTAGAAAGGCTTTACTTGAGTAACAATGACTTCAATGGAGAAATACCTTCTGAAATTGGTTTTCTCAGGCAACTTTCATCATTACACCTGGAAGTAAATTCTTTGAATGGATCAATCACACTGGAGATTGGGAATTGTGAAAGACTTGTGGACATAAATTTTGCTCACAACTCTCTTAGTGGCACTATCCCATCTTCATTTTCATTAATCAGCTCTTTGAACTCTCTGAATCTCTCAAGCAACAAACTTACAGGTATAATCCCAGAGTACTTGGAGAAAATGAAACTAAGTTCGATTGATTTGTCGGGTAATCAGCTCTTTGGAAGGGTTCCATCCAGTCTTCTGGCAATGAGTGGAGACAAAGCATTTTTGGACAACAAAGAACTCTGTGTTGATGAAAACTACAGAGAGAGGATAAAAACGGGCCTGACTACTTGTACTGGAAAGCATAGTCAAAAAGGGGTGCTAGAGGATAAACTTGTATTTTTCAGTATCATAGTCTCCATCTTGGTTTGTGTATTAGCAGGGCTGGTATTGGTAAGTTGTAATTACTTGAAGCGCAGTGAGACAAGCTCAGAGACCAGTCAGGAAGGGGACCAACAAGGAGCTCCAAAATGGAAAATTGCATCATTCCATCAAGTGGAAATTGATGCAGATGAAATAGGCAACTTTGAAGAAGACAATTTGATAGGGAGTGGAGGAACAGGAAAAGTTTATCGGTTGGATCTGAAGAAAAATGGCAGTACGGTGGCTGTTAAGCAGCTCTGGAAAGGAGATGCAATGAAGGTGTTGGCAGCAGAAATGGAGATTTTGGGGAAGATAAGACATAGAAACATCTTGAAGCTCTATGCTTGCTTAATGAGAGAGGGATCTAGTTATCTAGTTTTTGATTACATGATTAATGGAAACCTGCGTGAAGCACTTCAAAAACAAATCAAAGTTGGGCAGCCTGAATTGGACTGGAACCAGAGGTACAGGATTGCCTTGGGGGCAGCAAGGGGAATTGCTTACTTGCATCATGATTGTTCACCACCTATAATTCATAGAGATATAAAATCAACAAACATACTTCTAGATGGAGATTATGAACCAAAAATAGCTGATTTTGGAGTGGCAAAGGTTGCAGATCAGTTTCAAACTGTTTCTGAGAACAGCTCTCTTGCTGGCACTCATGGATATATTGCTCCTGAGCTAGCATATACTCCAAAAGTTTCAGAAAAGAGTGATGTGTACAGTTATGGTGTGGTGCTATTAGAATTGATTACTGGCAGGAAAGCAATCGAAGATGAATATGGAGAAGGAAAAGATATTGTTTACTGGGTTTCAACACACCTCAATGAGCGTGATAATGTCCTCAAGCTTCTAGACGTTAAAGTTGCTTCTGAAGTCGTCCAAAATGACATGATTAAAGTCCTGAAGATTGCTGTACTTTGCACAACAAAGCTTCCATCACTTCGCCCTTCCATGAGAGAGGTAGTGAAGATGCTATTAGACGCTGATCCTTACTCTTCTTCAATATCCCTGAAAAACAGTTCAACTAAAAAACATTTCGTTTAG 2916 39.75 MEKFHVYSLFIFILVSGLFVPTLSLPIETRALLRFKENLKDPAGFLHSWIDSKSPCGFSGVTCDRFSGKVVEISLENKSLSGEISPSISVLQSLTTLSLASNHIYGVLPYQLMNCSNLKVLNLTDNEMVGRIPDLSQLRNLEAFDLSINFFSGQFPFWVGNLTGLVSLGLGENEFETGEIPESIGNLKNLTWLYLANAYLRGEIPESLFELKALQTLDLSRNKISGKLSKSISKLKNLNKLELFVNCLTGEIPLEISNLTLLQEIDISANNFYGELPEEVGNLRNLVVFQSYENNFSGKLPEGFGNMQNLTAFSIYRNNFSGEFPVNFGRFAPLDSIDISENQFSGHFPKFLCENGKLQFLLALGNRFSGELPLSLAECKSLQRFRISNNQMSGRIPDGVWALPNAKMIDFSDNEFTGVISPNIGLSTSLSQLILLNNKFSGKLPSELGKLTNLERLYLSNNDFNGEIPSEIGFLRQLSSLHLEVNSLNGSITLEIGNCERLVDINFAHNSLSGTIPSSFSLISSLNSLNLSSNKLTGIIPEYLEKMKLSSIDLSGNQLFGRVPSSLLAMSGDKAFLDNKELCVDENYRERIKTGLTTCTGKHSQKGVLEDKLVFFSIIVSILVCVLAGLVLVSCNYLKRSETSSETSQEGDQQGAPKWKIASFHQVEIDADEIGNFEEDNLIGSGGTGKVYRLDLKKNGSTVAVKQLWKGDAMKVLAAEMEILGKIRHRNILKLYACLMREGSSYLVFDYMINGNLREALQKQIKVGQPELDWNQRYRIALGAARGIAYLHHDCSPPIIHRDIKSTNILLDGDYEPKIADFGVAKVADQFQTVSENSSLAGTHGYIAPELAYTPKVSEKSDVYSYGVVLLELITGRKAIEDEYGEGKDIVYWVSTHLNERDNVLKLLDVKVASEVVQNDMIKVLKIAVLCTTKLPSLRPSMREVVKMLLDADPYSSSISLKNSSTKKHFV 971
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17046210 17049787 + CmaCh04G024820.1 Cma04g02482 293563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02482 971 SUPERFAMILY L domain-like 54 302 - -
Cma04g02482 971 Gene3D Phosphorylase Kinase; domain 1 646 751 - -
Cma04g02482 971 Pfam Protein kinase domain 677 947 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g02482 971 ProSiteProfiles Leucine-rich repeat profile. 117 139 IPR001611 GO:0005515
Cma04g02482 971 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 9 961 - -
Cma04g02482 971 SUPERFAMILY L domain-like 247 570 - -
Cma04g02482 971 Gene3D Ribonuclease Inhibitor 26 179 IPR032675 -
Cma04g02482 971 ProSiteProfiles Protein kinase domain profile. 677 956 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g02482 971 Gene3D Transferase(Phosphotransferase) domain 1 752 967 - -
Cma04g02482 971 PRINTS Leucine-rich repeat signature 214 227 - -
Cma04g02482 971 PRINTS Leucine-rich repeat signature 523 536 - -
Cma04g02482 971 Pfam Leucine rich repeat N-terminal domain 28 64 IPR013210 -
Cma04g02482 971 SMART serkin_6 677 956 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g02482 971 SMART LRR_typ_2 523 546 IPR003591 -
Cma04g02482 971 SMART LRR_typ_2 451 475 IPR003591 -
Cma04g02482 971 SMART LRR_typ_2 259 283 IPR003591 -
Cma04g02482 971 SMART LRR_typ_2 162 187 IPR003591 -
Cma04g02482 971 SMART LRR_typ_2 211 235 IPR003591 -
Cma04g02482 971 SMART LRR_typ_2 91 114 IPR003591 -
Cma04g02482 971 Gene3D Ribonuclease Inhibitor 470 590 IPR032675 -
Cma04g02482 971 Gene3D Ribonuclease Inhibitor 370 469 IPR032675 -
Cma04g02482 971 ProSiteProfiles Leucine-rich repeat profile. 525 546 IPR001611 GO:0005515
Cma04g02482 971 ProSitePatterns Serine/Threonine protein kinases active-site signature. 799 811 IPR008271 GO:0004672|GO:0006468
Cma04g02482 971 Pfam Leucine rich repeat 502 559 IPR001611 GO:0005515
Cma04g02482 971 Gene3D Ribonuclease Inhibitor 180 274 IPR032675 -
Cma04g02482 971 Gene3D Ribonuclease Inhibitor 275 369 IPR032675 -
Cma04g02482 971 SUPERFAMILY Protein kinase-like (PK-like) 671 949 IPR011009 -
Cma04g02482 971 ProSitePatterns Protein kinases ATP-binding region signature. 683 706 IPR017441 GO:0005524
Cma04g02482 971 PANTHER RECEPTOR PROTEIN-TYROSINE KINASE CEPR2 9 961 - -
Cma04g02482 971 Pfam Leucine Rich Repeat 453 475 IPR001611 GO:0005515
Cma04g02482 971 Pfam Leucine Rich Repeat 214 235 IPR001611 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02482 Cma-Chr4:17046210 Cma09g00611 Cma-Chr9:2889430 0 dispersed
Cma17g01402 Cma-Chr17:9295074 Cma04g02482 Cma-Chr4:17046210 9.70E-48 dispersed
Cma15g00555 Cma-Chr15:2582225 Cma04g02482 Cma-Chr4:17046210 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68545 PF00069 Pkinase 8.20E-47 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02482 - - csv:101215749 1618.59