Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02492 ATGATGAACACCGGGATCTTTGAAGATATTGGCTTTTGCCAAAATCTTGAGTATTTTTCGGCTCCTTCTGGGGAACAAGAGACGGGTCGGGAGCATGAAGCAGAGGCTACTTTGGAGGAAGATTATAGCGATGAAGAGCTGGATGTTGATGAGCTTGAGAGAAGGATGTGGCGTGATCGGATGCTTTTGAGGCGACTCAAAGAACAAAGCAAAGAGAAGGAAGGGGATGATAATTCAAAGCAGCGTCAATCCCAGGAGCAGGCCCGAAGGAAGAAGATGTCTCGGGCTCAAGACGGTATCCTGAAATATATGTTGAAAATGATGGAGGTTTGTAAAGCTCAAGGTTTCGTTTATGGGATCATTCCTGAGAAAGGAAAGCCAGTGAGTGGAGCTTCTGATAATCTTCGTGCCTGGTGGAAAGAACGAGTCAGATTCGATAGAAATGGCCCAGCAGCCATTACCAAATATCAGGCTGATCATGCAATTCCTGGGATCAATGATGACTGCAATACAGTGACATCCACCCCCCACACTTTACAAGAGCTCCAAGATACGACCCTTGGATCACTTTTGTCCGCTCTGATGCAGCACTGTGATCCACCCCAGCGTCGTTTTCCATTAGAGAAGGGAGTTTCCCCACCATGGTGGCCTACTGGAAACGAGGAATGGTGGCCTGAATTGGGATTACCCAAGGACCAGGGGCCTCCCCCTTATAAGAAGCCCCATGATCTGAAGAAGGTTTGGAAAGTTGGCGTTCTCACTGCTGTGATTAAGCACATGTCGCCCGACATTGCCAAGATTCGCAAGCTTGTTTGTCAGTCTAAATGTTTGCAAGACAAGATGACTGCAAAAGAGAGTGCTACATGGCTGGCCATTGTAAACCAGGAAGAAGCCTTGGCCAGGAAATTGTATCCTGATAGATGCCCACCTGTGTCGATTTGTGGGAGCGGATCTATTTTAATCAGTGACAGTAGCGATTACGATGTTGAAGTAGTGGAAGACGAACCAAATGTCGAAACAGAGGAAAGCAAGCCTCATGCTCTCAATTTCTTTAATATGGGGGCTCCTGGTCCTAGAGAGAGGCCAATGATGCCACCATTGGGACCTCAGATAAAGGAAGAACTCATGGAGAACAATTCAAACTTTATTCAAAAGAGGACTCTGATTTCTGATGAGTCAAATGCAATGATGCCTCAGAAGATATATACTTGTGAAAATTCTCAGTGCCCATATAACAATTCGCGCCTCGGGTTTCTCGACAGGACTTCGAGAAACAACCACCAGTTGAACTGCCCATTTAGGAGTGATTCTTCCCCAATATTTGGCATCCCAAACTTTCTAACTAACGATGATAAATCATCTCCAGTTCTTCCCTCCTTTAACCATTCCAAGCCTCCTACCCGGCCTATGAACCCAACTCCACCCCTCAGAGTATCAGGCCTTGGACTTCCAGACGACGACCAGAAAATGATCACTGACCTTCTAAGTTTCTACGATTCTAACCATCAACAGGACAAGATTTTGATTTCCGGGAACGTCGAAGCAAGAGCCGATCACAACCAACAGCTGCCAACATTCCAACTCCAAGTTGATGATAACTTGTATTGCCAAGGAGCAATGGTGGGGGGAAGTAGCATGCCAATGCAGCTCCCTGATTTCTCTTCCACAAAAGTCCCATTTGACGAATACAAGACGTTCGATTCTCCTTTCGGCATGTATCCCAACGATAACATTCCCGACTTCAGATTTGGTTCTCCGTTTAACTTGGCATCAATCGATTACCCAGTAGACCCACCGTTGCCAAAGCAAGATACACAATTGTGGTACCTTTGA 1833 46.15 MMNTGIFEDIGFCQNLEYFSAPSGEQETGREHEAEATLEEDYSDEELDVDELERRMWRDRMLLRRLKEQSKEKEGDDNSKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVSGASDNLRAWWKERVRFDRNGPAAITKYQADHAIPGINDDCNTVTSTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVSPPWWPTGNEEWWPELGLPKDQGPPPYKKPHDLKKVWKVGVLTAVIKHMSPDIAKIRKLVCQSKCLQDKMTAKESATWLAIVNQEEALARKLYPDRCPPVSICGSGSILISDSSDYDVEVVEDEPNVETEESKPHALNFFNMGAPGPRERPMMPPLGPQIKEELMENNSNFIQKRTLISDESNAMMPQKIYTCENSQCPYNNSRLGFLDRTSRNNHQLNCPFRSDSSPIFGIPNFLTNDDKSSPVLPSFNHSKPPTRPMNPTPPLRVSGLGLPDDDQKMITDLLSFYDSNHQQDKILISGNVEARADHNQQLPTFQLQVDDNLYCQGAMVGGSSMPMQLPDFSSTKVPFDEYKTFDSPFGMYPNDNIPDFRFGSPFNLASIDYPVDPPLPKQDTQLWYL 610
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17074489 17076321 - CmaCh04G024920.1 Cma04g02492 293573

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02492 610 Gene3D - 82 162 IPR023278 GO:0003700|GO:0005634
Cma04g02492 610 Coils Coil 35 69 - -
Cma04g02492 610 SUPERFAMILY DNA-binding domain of EIN3-like 176 300 IPR023278 GO:0003700|GO:0005634
Cma04g02492 610 MobiDBLite consensus disorder prediction 22 45 - -
Cma04g02492 610 Gene3D - 174 307 IPR023278 GO:0003700|GO:0005634
Cma04g02492 610 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 6 609 IPR006957 GO:0005634
Cma04g02492 610 Pfam Ethylene insensitive 3 50 297 IPR006957 GO:0005634
Cma04g02492 610 PANTHER ETHYLENE INSENSITIVE 3-LIKE 1 PROTEIN 6 609 - -
Cma04g02492 610 MobiDBLite consensus disorder prediction 67 94 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02492 K14514 EIN3; ethylene-insensitive protein 3 - csv:101214396 995.727
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02492 Cma-Chr4:17074489 Cma10g00973 Cma-Chr10:5025672 0 dispersed
Cma15g00551 Cma-Chr15:2568863 Cma04g02492 Cma-Chr4:17074489 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g853 . . . . . . . . . . . . . . . . . Bhi04g01650 . . . . . Lcy10g1635 . . . . . . . . . . . Lsi08g00615 Csa06g00461 . . . . . . . . . . . Cmo04g02607 . Cma04g02492 . Car04g02399 . . Cpe01g02155 . . . . . . . Cla08g00868 Cam08g1308 Cec08g0891 Cco08g1004 Clacu08g1013 . Cre08g0804 . . . Cme03g01109
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma11g00814 . 2 602 EIL Transcription Factor Family AT2G27050 61.6 8.0e-198 687.6
Cma10g00973 . 2 619 EIL Transcription Factor Family AT2G27050 59.5 8.0e-190 661.0
Cma04g02492 . 7 523 EIL Transcription Factor Family AT2G27050 58.3 1.1e-159 560.8
Cma15g00551 . 1 508 EIL Transcription Factor Family AT2G27050 59.5 4.3e-159 558.9
Cma11g00834 . 66 366 EIL Transcription Factor Family AT2G27050 57.8 1.1e-90 331.6
Cma11g00834 . 73 327 EIL Transcription Factor Family AT5G21120 51.9 2.4e-73 273.9
Cma11g00834 . 58 573 EIL Transcription Factor Family AT1G73730 54.2 4.0e-138 489.2
Cma11g00814 . 36 334 EIL Transcription Factor Family AT1G73730 62.9 4.4e-105 379.4
Cma10g00973 . 36 334 EIL Transcription Factor Family AT1G73730 62.2 8.3e-104 375.2
Cma04g02492 . 39 334 EIL Transcription Factor Family AT1G73730 60.4 9.5e-100 361.7
Cma15g00551 . 40 335 EIL Transcription Factor Family AT1G73730 59.7 2.3e-98 357.1
Cma16g00693 . 21 270 EIL Transcription Factor Family AT1G73730 54.5 5.6e-76 282.7
Cma04g00807 . 111 360 EIL Transcription Factor Family AT1G73730 54.5 1.8e-74 277.7
Cma10g00973 . 3 619 EIL Transcription Factor Family AT3G20770 62.5 1.6e-207 719.9
Cma11g00814 . 3 602 EIL Transcription Factor Family AT3G20770 61.5 2.0e-207 719.5
Cma04g02492 . 6 609 EIL Transcription Factor Family AT3G20770 51.5 1.1e-163 574.3
Cma15g00551 . 7 512 EIL Transcription Factor Family AT3G20770 59.0 3.0e-158 556.2
Cma11g00834 . 66 326 EIL Transcription Factor Family AT3G20770 64.4 6.3e-92 335.9
Cma11g00834 . 83 288 EIL Transcription Factor Family AT5G65100 59.3 2.1e-70 264.2
Cma16g00693 . 19 356 EIL Transcription Factor Family AT5G10120 57.3 4.1e-104 375.9
Cma04g00807 . 108 445 EIL Transcription Factor Family AT5G10120 58.2 3.5e-103 372.9
Cma11g00834 . 75 290 EIL Transcription Factor Family AT5G10120 57.9 5.5e-72 269.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001004 3 9 2 2 3 2 4 2 2 1 2 2 4 2 2 4 2 6 4 2 2 2 2 2 2 2 2 3 4 2 83
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34964 PF04873 EIN3 4.20E-130 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g02492 Cma_Chr04 FPKM 47.046371 54.359268 48.603607 50.503021 14.066373 13.499109 15.056092 100.277641 93.232788 88.309143