Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02494 ATGTCGGCTTCGACCGTGTCGATAACGGCGAATCCGGCGGCGCGGAGGAGGCCGGTGTTGGTTTCGGAGAAGAAGGGGGCTAGTATTGAATTGTTGGCAACGGATGGCGCGAATCCTCTTTCGAATACCGCTACTGCTGGAACTGGTGGTGCGGCCGATGATAAGGTCGCCGGTGGAATTGGTAGGGATATGAGCCATCACTCGATTAGAGGTGAGGTTGTTCTCGAGCGGTCCTCTAGGGATCCACTTCAGATCAAGAAAACTGTTGCGAATTCCACCATTTCGCCGCGGCGGAGTAGAAAGGCGATTACGAAGCCGGAGAAGCCTCGATGGGCGACTATTCTTAGCGTGGTTACGAAGAATATTGTGCTTTTGATGGTTCTTCTAGGGTTGGTTCAAATGATTAGGAAATTAGCCCTAAAATCAGGGAATGGAGCGGTGGGAAATCAATTGGGGTTTTCAGAAGTTGAGGGACGGATTGCAGAAGTTGAAGCATTCTTGAAAACTACCACCAAGATGATTCAGGTGCAGGTGGAGGTCGTCGATCGGAAGATCGAGAACGAAGTTGGGGGATTGAGAAGGGAAGTTGACCATAAGATTGAGGCAAAAACTGCTGATCTTGAGAGCGGTTTGAAGGTGCTGCAGGATAAAGGGGAGGACCTGGAAAGGTCTTTGAGCGAGTTAACGGCCGTGGATTGGTTGTCGAAGCAAGAATTCGATAGGATTTACGAGGAATTGAAGAAGGCGAAGAGCGGTGAAATTGATGAGCGGTTTGCAAATTTGGATGATATAAGAGCCTATGCAAGGGAGGTGGTTGAGATGGAGATTGAGAAGCATGCGGCTGATGGACTTGGTAGGGTGGATTATGCTCTTGCTTCTGGTGGGGCTATGGTTGTAAAGCATTCCGAGCCGTTTACAGGAAGAACAAGTAATTGGTTTTCGAGAAATGCAAGGAACGGAGTTCATAGTAATGCGAATAAGATGCTGAAACCGAGTTTCGGGGAGCCCGGGCAGTGCTTCCCCTTGAAAGGAAGTAGCGGGTTCGTTCAAATTAGGCTGCGGACGGCGATCGTTCCAGAAGCTGTTACTCTAGAGCATGTTGCCAAGAGCGTAGCATACGATAGATCAAGCGCACCTAAGGCGTGCAGGGTATCTGGGTGGTTTCAAGGGGACGACGTTGCTGCCTCAGCTGCAAATGCTGAGAAGATGTTTCTCTTGGCCGAGTTCACGTACGATCTTGAAAAGAGCAATGCACAGACATTCAACGTGGTGGAGACAACAGGCTCCGGACTCGTTGACATGATCCGATTAGATTTCTCATCCAACCATGGAAGCCCGTCGCACACTTGCATCTACCGCAATCTTTTGGCTAGTAAGCTGCACAGATGTTGCCTTTTACTCTTCTTTGTTTCCCTTCGGCATTGTAATGTGGGGTTATGTTTTGTTTTTTTTACTGTGCAGGCCCGTCGGATTTCAATCAAAAGATTTGATCCTTCGCCATTTTGCGATGAACATTTGAAGAACTTCGATCAAACAACTTCTCCAATTGCAGCAATGAAAGGATCAAATCACACACTGCGGAACTCGGCGTTTCTTCAAAGAATCTCTAACATTCAATTTCAGTTCAATTTATTTTCATTGGCAATTGATCTTCGATTTGGGTCAGTAGAATGGATAAGAAATTCCAATATCAACAATGACTTTCAAAGAACAAGACTCAAGAAAGAAGTATCATTAAATATCTATTTCTTTTTCTTCCTCTGCTTTCAGTCCTTCATTAGAAAAATATTTGCCATGGGAGAAAGAAATGGGAAGAAAGAGTTCAAAGGTTCATTTGAGTCCACTGAAAAGGGCTTAGAATCGATTTCGGATCTAGAGCTAGACAGTGCGTTCTTAGGCAGCACGGACTCTCTAATGAGTCGTGATCAAGAAGAAATTCAATCCTTCCGTGTTTTTGTTGCAACATGGAATGTTGGAGGAAAATCTCCCCATACTAACCTCAATCTGAACGATTTTATTAAGAACGACGACAGCGCTGATATTTACATATTCGGTTTTCAGGAAATTGTGCCTCTAAATGCTGGAAATGTTCTCGTTATTGAAGACAATGAGCCTGCTGCAAGATGGCTATCCTTAATTAACCAATCATTGAACAACCCAATAAATGGCTGCTCAAGAGGACCGAAACCTGCCACTGGTTTTAGCGGTTCTAAATTCTTTCCAAAACCTTCTCTTAAAAGCATCAGTAAAACTTTCAGGACTGTAAGTAGAAGGAAGCTAAAAAGTTGCAATTGTACGCCACTGGAACTTGAAAGGAAACGCAGTAAGGATTTCTGGTTTCGGTGCCAACCATCACATGTGAGTGAAGATGGTATTTCTTCAGAAGAAGATGAAGAGGAGGATCCAAGCGTCTTTGATATTTCAGAGATTTCCATTCCTGAAAGCGGTAACGAGATGAAGTATGGTCTCATTGCAAGTAAACAAATGGTTGGCATTTTTGTCACAATTTGGATGAGGAAGGAGCTTGTTCCATATGTTAGCCACTTACGAATTGCAAGTACCAGTCGTGGAATCATGGGATGCCTCGGCAACAAGGGGTGCATTTCAGTGAGCATGTTATTTCACCAGACAAGCTTTTGCTTCATCTGCAGCCACTTAGCTTCAGGAGAGAAAGAAGGGGATGAACTGAGGAGAAATTTGGATGTCATAGAAATCCTTAAGAACACTCAGTTTCCAAAAATATGCAGAACACCTTACGGTCGAATGCCAGAGAAAATCCTTGGACACAAACGAATAATATGGTTAGGAGATTTGAACTATCGGATAGCTTTGAGCTACTCGGAAACTCGAAGGCTTATGGAAGCGAATCACTGGGATGAACTTCTTAACAAAGATCAGCTAAAGATCGAAAGGGATGCAGGGCGAGTGTTCTATGGATGGAAAGAGGGAACAATTTACTTCGCCCCCACGTATAAATACTACTACAACTCCGACACGTACGCCGGGGACTCGAAAAAATCGAAAAAGAAGAGAAGAACTCCAGCTTGGTGTGACAGAATTTTATGGCACGGTGATGGCATACGACAACTTTATTACATTCGTGGGGAATCCCAATTCTCCGATCACCGCCCCGTTTGTGCAACGTTCATAGTCGACGTCACGGTCGTTGAAGGAGGGCCAAAGAAGAAAATGCTTGAATCCAACATGAAAGTTGGAGCTGAAGAAATACTATCAACAAACAGTAGATACTACTACCCCTAA 3261 44.59 MSASTVSITANPAARRRPVLVSEKKGASIELLATDGANPLSNTATAGTGGAADDKVAGGIGRDMSHHSIRGEVVLERSSRDPLQIKKTVANSTISPRRSRKAITKPEKPRWATILSVVTKNIVLLMVLLGLVQMIRKLALKSGNGAVGNQLGFSEVEGRIAEVEAFLKTTTKMIQVQVEVVDRKIENEVGGLRREVDHKIEAKTADLESGLKVLQDKGEDLERSLSELTAVDWLSKQEFDRIYEELKKAKSGEIDERFANLDDIRAYAREVVEMEIEKHAADGLGRVDYALASGGAMVVKHSEPFTGRTSNWFSRNARNGVHSNANKMLKPSFGEPGQCFPLKGSSGFVQIRLRTAIVPEAVTLEHVAKSVAYDRSSAPKACRVSGWFQGDDVAASAANAEKMFLLAEFTYDLEKSNAQTFNVVETTGSGLVDMIRLDFSSNHGSPSHTCIYRNLLASKLHRCCLLLFFVSLRHCNVGLCFVFFTVQARRISIKRFDPSPFCDEHLKNFDQTTSPIAAMKGSNHTLRNSAFLQRISNIQFQFNLFSLAIDLRFGSVEWIRNSNINNDFQRTRLKKEVSLNIYFFFFLCFQSFIRKIFAMGERNGKKEFKGSFESTEKGLESISDLELDSAFLGSTDSLMSRDQEEIQSFRVFVATWNVGGKSPHTNLNLNDFIKNDDSADIYIFGFQEIVPLNAGNVLVIEDNEPAARWLSLINQSLNNPINGCSRGPKPATGFSGSKFFPKPSLKSISKTFRTVSRRKLKSCNCTPLELERKRSKDFWFRCQPSHVSEDGISSEEDEEEDPSVFDISEISIPESGNEMKYGLIASKQMVGIFVTIWMRKELVPYVSHLRIASTSRGIMGCLGNKGCISVSMLFHQTSFCFICSHLASGEKEGDELRRNLDVIEILKNTQFPKICRTPYGRMPEKILGHKRIIWLGDLNYRIALSYSETRRLMEANHWDELLNKDQLKIERDAGRVFYGWKEGTIYFAPTYKYYYNSDTYAGDSKKSKKKRRTPAWCDRILWHGDGIRQLYYIRGESQFSDHRPVCATFIVDVTVVEGGPKKKMLESNMKVGAEEILSTNSRYYYP 1086
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17082795 17093811 - CmaCh04G024940.1 Cma04g02494 293575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02494 1086 Pfam Sad1 / UNC-like C-terminal 322 453 IPR012919 -
Cma04g02494 1086 ProSiteProfiles SUN domain profile. 293 461 IPR012919 -
Cma04g02494 1086 Gene3D Endonuclease/exonuclease/phosphatase 635 1080 IPR036691 -
Cma04g02494 1086 Gene3D - 265 459 - -
Cma04g02494 1086 SMART i5p_5 647 1057 IPR000300 GO:0016791|GO:0046856
Cma04g02494 1086 Coils Coil 211 231 - -
Cma04g02494 1086 Pfam Endonuclease/Exonuclease/phosphatase family 654 1042 IPR005135 GO:0003824
Cma04g02494 1086 SUPERFAMILY DNase I-like 644 1066 IPR036691 -
Cma04g02494 1086 PANTHER TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 9 640 1066 IPR045849 GO:0004445|GO:0046855
Cma04g02494 1086 PANTHER TYPE I INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 10 640 1066 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g02494 Cma15g00547 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02494 Cma-Chr4:17082795 Cma07g00532 Cma-Chr7:2303167 3.69E-170 dispersed
Cma17g00220 Cma-Chr17:1120225 Cma04g02494 Cma-Chr4:17082795 7.38E-120 dispersed
Cma15g00548 Cma-Chr15:2557830 Cma04g02494 Cma-Chr4:17082795 0 transposed
Cma15g00547 Cma-Chr15:2546949 Cma04g02494 Cma-Chr4:17082795 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02494 - - cmax:111487226 1001.5