Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma04g02495 | ATGGGGATTCAAACGATGGGGTCTCAAGGCAGAGGTGATCCGAATGGCAAACAATCGCAATTGGAGCCATTGGTTCGACAAAACTCGCTATATAGTCTCACTTTGGATGAGGTCCAAAACCAGTTGGGTGATCTAGGAAAGCCATTAATCAGTATGAATCTTGATGAGCTTCTTAAGAATGTGTGGACCGCTGAGGCTAACCAAAACGTCGGTAAGGACAATGAATACAATACTGTTTTGTCGAATCTAACGCCCCAACATCGTCAGGGTAGTCTCACGTTGAATGGTGCTCTGAGTAAAAAGACAGTTGACGAGGTGTGGAGAGACATTCAACAAAGCAAAGATAGTGAGGAGAAGAAGTCTTGTGAACGACAACCTACGTTGGGAGAGATGACATTGGAAGATTTTCTGGTTAAAGCCGGGGTCGTTGCTGAGACGTCACCGAATAAGAAAGGTGCAGGTCCTGTTGTTGAAGTCGACGCAAACATCACACCACAGTTCCCCCAACAAGGACAGTGGATGCAGTTCCCCCAAGTTCAATATCAGCCTCAACAAACAGCAATGATGGGGGTTTACATGCCGAGCCAGCCTATTCCCCAGCCGATGCACGTCGGGGCTGGCACCGTGATGGATGGTCCATATGTAGACAATCAGTTGGCATTGCCAACGCCATTGATCGGAGCGTTATCTGACACACAGACATCTGGAAGGAAAAGGGGAGCGTCTGAAGACATGATTGAGAAAACTGTCGAGCGTAGACAGAAAAGGATGATAAAGAATCGGGAATCTGCCGCTCGTTCACGAGCAAGGAAGCAGGCTTATACCAATGAACTGGAGAACAAAGTTTCGCGTTTGGAAGAGGAAAACGAAAGGCTCAGGAAACGTAAGGAGCTGGAAAATTTGCTACCATCGACCCCCTCGCCCGAGCCGAAGTATCAGCTTCGAAGAACATCGTCAGCGCGGTTCTAA | 969 | 47.99 | MGIQTMGSQGRGDPNGKQSQLEPLVRQNSLYSLTLDEVQNQLGDLGKPLISMNLDELLKNVWTAEANQNVGKDNEYNTVLSNLTPQHRQGSLTLNGALSKKTVDEVWRDIQQSKDSEEKKSCERQPTLGEMTLEDFLVKAGVVAETSPNKKGAGPVVEVDANITPQFPQQGQWMQFPQVQYQPQQTAMMGVYMPSQPIPQPMHVGAGTVMDGPYVDNQLALPTPLIGALSDTQTSGRKRGASEDMIEKTVERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKRKELENLLPSTPSPEPKYQLRRTSSARF | 322 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 17095439 | 17097458 | - | CmaCh04G024950.1 | Cma04g02495 | 293576 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma04g02495 | 322 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 250 | 295 | IPR004827 | GO:0003700|GO:0006355 | |
Cma04g02495 | 322 | Coils | Coil | 268 | 302 | - | - | |
Cma04g02495 | 322 | PANTHER | ABSCISIC ACID-INSENSITIVE 5-LIKE PROTEIN 2 | 8 | 320 | - | - | |
Cma04g02495 | 322 | CDD | bZIP_plant_BZIP46 | 252 | 298 | - | - | |
Cma04g02495 | 322 | Pfam | bZIP transcription factor | 252 | 296 | IPR004827 | GO:0003700|GO:0006355 | |
Cma04g02495 | 322 | MobiDBLite | consensus disorder prediction | 306 | 322 | - | - | |
Cma04g02495 | 322 | SMART | brlzneu | 248 | 320 | IPR004827 | GO:0003700|GO:0006355 | |
Cma04g02495 | 322 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Cma04g02495 | 322 | MobiDBLite | consensus disorder prediction | 296 | 322 | - | - | |
Cma04g02495 | 322 | Gene3D | - | 250 | 304 | - | - | |
Cma04g02495 | 322 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 255 | 270 | IPR004827 | GO:0003700|GO:0006355 | |
Cma04g02495 | 322 | PANTHER | CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED | 8 | 320 | IPR043452 | GO:0003700|GO:0045893 | |
Cma04g02495 | 322 | SUPERFAMILY | Leucine zipper domain | 252 | 297 | IPR046347 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma04g02452 | Cma-Chr4:16862102 | Cma04g02495 | Cma-Chr4:17095439 | 4.12E-23 | dispersed | |
Cma04g02495 | Cma-Chr4:17095439 | Cma10g00989 | Cma-Chr10:5137244 | 4.79E-65 | dispersed | |
Cma09g00657 | Cma-Chr9:3123993 | Cma04g02495 | Cma-Chr4:17095439 | 1.73E-18 | dispersed | |
Cma15g00593 | Cma-Chr15:2808330 | Cma04g02495 | Cma-Chr4:17095439 | 1.97E-19 | dispersed | |
Cma16g01250 | Cma-Chr16:9455393 | Cma04g02495 | Cma-Chr4:17095439 | 5.71E-19 | dispersed | |
Cma04g02495 | Cma-Chr4:17095439 | Cma15g00547 | Cma-Chr15:2546949 | 7.52E-178 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34965 | PF00170 | bZIP_1 | 9.30E-13 | CL0018 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma04g02495 | K14432 | - | csv:101213915 | 514.612 |