Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02495 ATGGGGATTCAAACGATGGGGTCTCAAGGCAGAGGTGATCCGAATGGCAAACAATCGCAATTGGAGCCATTGGTTCGACAAAACTCGCTATATAGTCTCACTTTGGATGAGGTCCAAAACCAGTTGGGTGATCTAGGAAAGCCATTAATCAGTATGAATCTTGATGAGCTTCTTAAGAATGTGTGGACCGCTGAGGCTAACCAAAACGTCGGTAAGGACAATGAATACAATACTGTTTTGTCGAATCTAACGCCCCAACATCGTCAGGGTAGTCTCACGTTGAATGGTGCTCTGAGTAAAAAGACAGTTGACGAGGTGTGGAGAGACATTCAACAAAGCAAAGATAGTGAGGAGAAGAAGTCTTGTGAACGACAACCTACGTTGGGAGAGATGACATTGGAAGATTTTCTGGTTAAAGCCGGGGTCGTTGCTGAGACGTCACCGAATAAGAAAGGTGCAGGTCCTGTTGTTGAAGTCGACGCAAACATCACACCACAGTTCCCCCAACAAGGACAGTGGATGCAGTTCCCCCAAGTTCAATATCAGCCTCAACAAACAGCAATGATGGGGGTTTACATGCCGAGCCAGCCTATTCCCCAGCCGATGCACGTCGGGGCTGGCACCGTGATGGATGGTCCATATGTAGACAATCAGTTGGCATTGCCAACGCCATTGATCGGAGCGTTATCTGACACACAGACATCTGGAAGGAAAAGGGGAGCGTCTGAAGACATGATTGAGAAAACTGTCGAGCGTAGACAGAAAAGGATGATAAAGAATCGGGAATCTGCCGCTCGTTCACGAGCAAGGAAGCAGGCTTATACCAATGAACTGGAGAACAAAGTTTCGCGTTTGGAAGAGGAAAACGAAAGGCTCAGGAAACGTAAGGAGCTGGAAAATTTGCTACCATCGACCCCCTCGCCCGAGCCGAAGTATCAGCTTCGAAGAACATCGTCAGCGCGGTTCTAA 969 47.99 MGIQTMGSQGRGDPNGKQSQLEPLVRQNSLYSLTLDEVQNQLGDLGKPLISMNLDELLKNVWTAEANQNVGKDNEYNTVLSNLTPQHRQGSLTLNGALSKKTVDEVWRDIQQSKDSEEKKSCERQPTLGEMTLEDFLVKAGVVAETSPNKKGAGPVVEVDANITPQFPQQGQWMQFPQVQYQPQQTAMMGVYMPSQPIPQPMHVGAGTVMDGPYVDNQLALPTPLIGALSDTQTSGRKRGASEDMIEKTVERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKRKELENLLPSTPSPEPKYQLRRTSSARF 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17095439 17097458 - CmaCh04G024950.1 Cma04g02495 293576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02495 322 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 250 295 IPR004827 GO:0003700|GO:0006355
Cma04g02495 322 Coils Coil 268 302 - -
Cma04g02495 322 PANTHER ABSCISIC ACID-INSENSITIVE 5-LIKE PROTEIN 2 8 320 - -
Cma04g02495 322 CDD bZIP_plant_BZIP46 252 298 - -
Cma04g02495 322 Pfam bZIP transcription factor 252 296 IPR004827 GO:0003700|GO:0006355
Cma04g02495 322 MobiDBLite consensus disorder prediction 306 322 - -
Cma04g02495 322 SMART brlzneu 248 320 IPR004827 GO:0003700|GO:0006355
Cma04g02495 322 MobiDBLite consensus disorder prediction 1 22 - -
Cma04g02495 322 MobiDBLite consensus disorder prediction 296 322 - -
Cma04g02495 322 Gene3D - 250 304 - -
Cma04g02495 322 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 255 270 IPR004827 GO:0003700|GO:0006355
Cma04g02495 322 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 8 320 IPR043452 GO:0003700|GO:0045893
Cma04g02495 322 SUPERFAMILY Leucine zipper domain 252 297 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02452 Cma-Chr4:16862102 Cma04g02495 Cma-Chr4:17095439 4.12E-23 dispersed
Cma04g02495 Cma-Chr4:17095439 Cma10g00989 Cma-Chr10:5137244 4.79E-65 dispersed
Cma09g00657 Cma-Chr9:3123993 Cma04g02495 Cma-Chr4:17095439 1.73E-18 dispersed
Cma15g00593 Cma-Chr15:2808330 Cma04g02495 Cma-Chr4:17095439 1.97E-19 dispersed
Cma16g01250 Cma-Chr16:9455393 Cma04g02495 Cma-Chr4:17095439 5.71E-19 dispersed
Cma04g02495 Cma-Chr4:17095439 Cma15g00547 Cma-Chr15:2546949 7.52E-178 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34965 PF00170 bZIP_1 9.30E-13 CL0018 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02495 K14432 - csv:101213915 514.612