Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02499 ATGGCGTCGGATTGGCCGCTCTTGATTGTATCTCCAAGAACGCCCAAAACTACATCTCACGATCTACAAAAACAGGAGCCGAACCAACCTGGATTGTTCTTCGCCATGAATGAGAACTTAGCGAGTACTGAACTAGGTCACCGCGCTTTCTCGCGGCGAAGTCAATCGTCGCTACAATCGAAATCCTCAATTCGCGAAGTGAGTTCTAGTGATGATTTTGGATCGAGGCCTGTTCGTCATGGTTCTCGAGGTGCCGATTCTGAAGCACTGAGCTTATCACAGAAGGAGATCAATGACGAAGATGCGAGGTTGATTTACATCGATGATCCTGAGAAGACGAACGAGAAGTTTGAATTCGCTAGAAATTCGATTCGCACCTGCAAGTATTCGATTCTAACTTTTCTACCGAGAAATCTGTTTGAACAGTTTCATAGAATTGCTTATATATATTTCCTAGCTATTGCTGTTCTTAATCAACTTCCCCAGCTTGCCGTTTTTGGTCGAACAGTATCTATTTTGCCTTTAGCTTTTGTGCTTCTTGTTACTGCTGTTAAAGATGCATATGAGGATTGGAGAAGGCATCGTTCTGATAAGATTGAGAACAATAGATTAGCTTCAGTTTTGGTTGATGGTCAGTTTCATGATAAGAAATGGAAGGATATTAGAGTTGGTGAGATAATTAAGATTGGTGCAAATGGTACCATTCCTTGTGATATGGTGCTTCTTTCTACTAGTGATTCCACAGGGGTTGCTTATGTGCAGACCTTGAATTTGGACGGTGAATCGAATTTGAAAACGAGGTATGCGAAACAGGAGACGATGTCTAAAATGCCCGACAAGGAGAAGATTGTTGGGTTGATTAAATGTGAGAAACCCAATAGGAATATCTATGGATTTCATGCTAATATGGAGATTGATGGGAAACGACTTTCGCTTGGACCTCCAAACATTGTTCTTCGAGGCTGTGAGCTCAAGAATACGAACTGGGCGGTTGGCGTTGCTGTATATGCTGGCCGTGAGACCAAAGCCATGCTTAATAGTTCTGGAGCTCCGTCGAAAAGAAGTCGACTCGAGACTCGTATGAATGTGGAGATTATTATGCTCTCTTTCTTTCTCATTGCTTTGTGTATAGTTGTTTGTGTTCTTGCTGGTGTTTGGTTCTTTAGAAACAGGGAAGATTTGGACGTTTTGCCTTATTTCAGGAATAAGGATTTCTCAAAAGATCCACCTGAAACCTATAACTATTATGGATGGGGATTGGAGGCCTTTTTTGTATTCCTCATGTCAGTCATTGTGTTTCAGATCATGATCCCTATTTCACTTTACATTTCGATGGAGCTGGTTCGTGTTGGCCAGGCTTATTTCATGATCAGAGACGTTCAAATGTACGATGGAACATCGAATTCTAGATTTCAGTGTCGAGCTTTGAACATAAATGAGGATTTAGGACAAATAAAGTATGTTTTTTCAGACAAAACGGGTACTCTTACTGAGAATAAGATGGAGTTTCGATGTGCTAGCATTTCGGGGGTCGATTATGCAGGTGAAAGTACCGGCCCCCTCGATGAGCAGATTGGATACTCGGCTCTAGTGAATGGAAAGGTTTTGAGACCGAAAATGGCTGTCAAAACCGACCCCGAGCTTCTACAGTTATCAAAAAGTGGAAAGCACACCAAGAATGGAAGATATATTCATGATTTCTTCCTGGCATTAGCTGCTTGCAATACCATTGTTCCTCTTATTACAGAAACTTCTGATCCTTCAGTGCAATTAGTTGACTACCAAGGGGAGTCCCCAGATGAACAGGCATTGGTTTATGCTGCTGCGGCATACGGTTTTATGCTGATCGAACGAACCTCTGGTCATATAGTTATCGACATACATGGTACAAAAGAAAGATATAATGTTTTGGGAATGCACGAGTTCGATAGCGACAGGAAGCGGATGTCGGTGATATTGGGATGTCCCGATATGTCCTTCAAAGTATTTGTAAAAGGTGCTGATAACTCCATGTTCAAGGTGATGGGTGGAAATATGAACACGAGTATCATTCAAGCCACTAAAGCTCATCTTCATTCATACTCATCAAAGGGTCTCAGAACACTGGTTATTGGGATGAAAGAACTCAGTTCTTCTGACTTTGATAAATGGCACTTGATGTTTGAGGAAGCAAGCACTGCTCTGATCGGCAGAGCAGCTAAGCTTCGCAAGGTTTCCAGTAGCATAGAAAACAATTTATCCATATTGGGGGCCTCTGGCATTGAAGATAAGTTACAAAAAGGTGTTCCAGAAGCTATAGAAGCTTTAAGAATGGCAGGCATTAAAGTATGGGTTTTGACTGGGGATAAGCAAGAAACAGCCATATCAATAGGTTACTCCTCCAAGCTCTTGACAAACAAGATGACCCAAATTATCATTAACAGCAACTCGGTTGATTCATGCCGAAGGAGTTTAGAAGATGCAATAATTATGTCGAAAAAGCTTGCTACTGCGTCGGGGGTTACACTGGATAGCGAAGGACGTACCGAAGCTATAACGGCTTCGGTTGCGTTGATCATTGATGGTAGCAGCCTTGTTCATATTCTTGACAGTAGACTTGAAGAACAGCTTTTCCAACTATCTTGTCACTGTTCGGTGGTGTTATGCTGTCGAGTTGCTCCATTGCAGAAAGCTGGAATTGTTGCTCTTGTCAAGAGAAGGACTTCTGACATGACACTTGCCATTGGTGATGGCGCAAATGACGTGTCAATGATCCAAAAGGCGGATGTGGGTGTCGGTATCAGCGGTCTAGAGGGTCGACAAGCTGTCATGGCGTCGGATTTCGCCATGGGGCAATTTAGATTCTTGGTTCCTCTTCTACTGGTACATGGACATTGGAATTACCAGCGCATGGGCTACATGATCTTGTACAACTTTTATAGAAATGCAGTATTTGTGCTTGTTCTCTTTTGGTACGTGCTCTTTACGGGTTACTCGTTATCGACCGCGATCAACCAATGGAGCAGTGTACTCTACTCTATAATCTATACTTGTTTGCCCACAATCGTTGTTGGAATTCTTGACAAAGACTTGGGAAGAAGGACCCTTCTTAGTTACCCTCAACTCTATGGGGCAGGCCATAGACAAGAGAGCTACAACTCTGGCTTGTTTTGGTTAACAATGGTTGACACTGTGTGGCAAAGCATTGCTATTTTCTTCATCCCCCTCCTTTCCTTCTGGGCTACCACTGTCGACATTTCAGGCCTCGGAGATCTCTGGCTACTCGCTACGGTCATCGTCGTCAACTTACACTTGGCAATGGACGTGTTTCGATGGTATTTCATCACCCATGCCGTGATTTGGGGATCCACTCTCGCAACAGTCATTTGTGTCATTGTTCTTGATTCGATATTGTCGCTTCCCGGTTACTGGGCGATATATCACGTGGCGGGCAGAGCATCTTTTTGGCTATGTTTGTTATCGATCATCGTTGTAGCGTTACTTCCTCGGTTCGTCGTAAAGTACCTTTATCAATATTATAGTCCATGTGACATCCAAATAGCAAGAGAGGCTGATAAATTTGGAAGAATAAGAGAGATGGGAGTTGTACAAACAGAGATGATCCCAGTCCTCGACAATCCTTCACAACTATTATGA 3636 42.96 MASDWPLLIVSPRTPKTTSHDLQKQEPNQPGLFFAMNENLASTELGHRAFSRRSQSSLQSKSSIREVSSSDDFGSRPVRHGSRGADSEALSLSQKEINDEDARLIYIDDPEKTNEKFEFARNSIRTCKYSILTFLPRNLFEQFHRIAYIYFLAIAVLNQLPQLAVFGRTVSILPLAFVLLVTAVKDAYEDWRRHRSDKIENNRLASVLVDGQFHDKKWKDIRVGEIIKIGANGTIPCDMVLLSTSDSTGVAYVQTLNLDGESNLKTRYAKQETMSKMPDKEKIVGLIKCEKPNRNIYGFHANMEIDGKRLSLGPPNIVLRGCELKNTNWAVGVAVYAGRETKAMLNSSGAPSKRSRLETRMNVEIIMLSFFLIALCIVVCVLAGVWFFRNREDLDVLPYFRNKDFSKDPPETYNYYGWGLEAFFVFLMSVIVFQIMIPISLYISMELVRVGQAYFMIRDVQMYDGTSNSRFQCRALNINEDLGQIKYVFSDKTGTLTENKMEFRCASISGVDYAGESTGPLDEQIGYSALVNGKVLRPKMAVKTDPELLQLSKSGKHTKNGRYIHDFFLALAACNTIVPLITETSDPSVQLVDYQGESPDEQALVYAAAAYGFMLIERTSGHIVIDIHGTKERYNVLGMHEFDSDRKRMSVILGCPDMSFKVFVKGADNSMFKVMGGNMNTSIIQATKAHLHSYSSKGLRTLVIGMKELSSSDFDKWHLMFEEASTALIGRAAKLRKVSSSIENNLSILGASGIEDKLQKGVPEAIEALRMAGIKVWVLTGDKQETAISIGYSSKLLTNKMTQIIINSNSVDSCRRSLEDAIIMSKKLATASGVTLDSEGRTEAITASVALIIDGSSLVHILDSRLEEQLFQLSCHCSVVLCCRVAPLQKAGIVALVKRRTSDMTLAIGDGANDVSMIQKADVGVGISGLEGRQAVMASDFAMGQFRFLVPLLLVHGHWNYQRMGYMILYNFYRNAVFVLVLFWYVLFTGYSLSTAINQWSSVLYSIIYTCLPTIVVGILDKDLGRRTLLSYPQLYGAGHRQESYNSGLFWLTMVDTVWQSIAIFFIPLLSFWATTVDISGLGDLWLLATVIVVNLHLAMDVFRWYFITHAVIWGSTLATVICVIVLDSILSLPGYWAIYHVAGRASFWLCLLSIIVVALLPRFVVKYLYQYYSPCDIQIAREADKFGRIREMGVVQTEMIPVLDNPSQLL 1211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17118124 17123764 + CmaCh04G024990.1 Cma04g02499 293580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02499 1211 Gene3D - 746 948 IPR023214 -
Cma04g02499 1211 MobiDBLite consensus disorder prediction 12 28 - -
Cma04g02499 1211 Gene3D - 180 346 - -
Cma04g02499 1211 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 878 991 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma04g02499 1211 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 421 513 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma04g02499 1211 CDD P-type_ATPase_APLT_Dnf-like 121 1068 - -
Cma04g02499 1211 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 119 1183 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Cma04g02499 1211 Pfam Phospholipid-translocating ATPase N-terminal 105 171 IPR032631 -
Cma04g02499 1211 SFLD C1.7: P-type atpase like 473 959 - -
Cma04g02499 1211 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 5 1208 - -
Cma04g02499 1211 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 496 722 IPR023299 GO:0000166
Cma04g02499 1211 MobiDBLite consensus disorder prediction 1 28 - -
Cma04g02499 1211 ProSitePatterns E1-E2 ATPases phosphorylation site. 491 497 IPR018303 -
Cma04g02499 1211 MobiDBLite consensus disorder prediction 51 90 - -
Cma04g02499 1211 Pfam E1-E2 ATPase 205 447 - -
Cma04g02499 1211 SUPERFAMILY Calcium ATPase, transmembrane domain M 119 1174 IPR023298 -
Cma04g02499 1211 Gene3D - 592 726 IPR023299 GO:0000166
Cma04g02499 1211 MobiDBLite consensus disorder prediction 51 70 - -
Cma04g02499 1211 SUPERFAMILY Calcium ATPase, transduction domain A 202 343 IPR008250 -
Cma04g02499 1211 Pfam Cation transport ATPase (P-type) 597 673 - -
Cma04g02499 1211 PRINTS P-type cation-transporting ATPase superfamily signature 489 503 - -
Cma04g02499 1211 PRINTS P-type cation-transporting ATPase superfamily signature 908 927 - -
Cma04g02499 1211 Pfam Phospholipid-translocating P-type ATPase C-terminal 936 1175 IPR032630 -
Cma04g02499 1211 SFLD p-type atpase 473 959 IPR044492 -
Cma04g02499 1211 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 5 1208 - -
Cma04g02499 1211 SUPERFAMILY HAD-like 476 949 IPR036412 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00292 Cma-Chr3:3818198 Cma04g02499 Cma-Chr4:17118124 0 dispersed
Cma04g02499 Cma-Chr4:17118124 Cma07g01220 Cma-Chr7:6700783 0 dispersed
Cma15g00540 Cma-Chr15:2516756 Cma04g02499 Cma-Chr4:17118124 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02499 K14802 - csv:101212953 2171.74