Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02532 ATGAGTTTGGAACCCGGTTCAAGACAAAGTCAAAGACAAACCTCTCAAAACGCATCGTTTAATCTCATCCGTAGGAAAACCGGAAATCCCAAGTCTTCGACCAATCCGTTGCCGCGTCTCTCTGATTCCGCCGCCCCCAACTCCACCACTTCTCTCTCCGACTCCGATTTCTTCCTCTTTCAGCTCAGTTTTCTCCAAGCCGAAATCTCCGATTCTTTCTCCGATCTCCGCTGCACCGTCACGCCACCTCTGATTGCTTACTTGTCTCCCATCTCCTTCTCTGTCGCTGCCGTCGCCTTCGCCTTCGCGCCTCCATATCTCCCGCTCTGCTGCAACCTCACACCGTCATCCCAAGAGTTCCCAACAGAGCGCGAATCTTTGGTTCCAAGGCTGCCGGAAAGGAGATTACGCGTGCAAGGGAAGGCTATGGCTTTAACAGCCCCAGGGCAGCTCAATGTTAACGAGTCCCCTTCGTGGGGATCTAGAGGTGTCGACTGCTTCGAAAAACTGGAGCAGATTGGTGAAGGCACTTATGGTCAAGTTTACATGGCCAGAGAATTGAGAACAGGTGAAATAGTTGCACTCAAGAAAATACGAATGGATAATGAGAGGGAGGGGTTCCCTATTACTGCCATTCGAGAAATCAAAATTCTAAAGAAGCTCCACCATGAAAATGTAATCAAATTGAAAGAGATTGTGACATCTCCAGGTCCTGAGAAGGATGAACAAGGGAAGCCAGGCATATTCTCTGTCTTCATTTGCAGCATTAGCCTTCAATGGCTTATATTTGTTCTTTTCATTTGTGTAGAATTTAGTTGCATTGATGGTAACAAGTACAAGGGTGGCATCTACATGGTTTTCGAGTACATGGACCATGATTTGACAGGTCTTGCTGATCGTCCAGGGATGAGGTTTTCAGTTCCCCAAATCAAGTGCTACATGAGGCAGCTTCTCACAGGACTTCACTATTGTCATGTAAATCAAGTACTGCATAGGGATATAAAAGGCTCAAATCTGCTTATTGACAATGAAGGAAATCTGAAGCTTGCAGATTTTGGGCTTGCCCGATCATTTTCTAATGATATCAATGCAAATCTAACAAATCGTGTCATTACCTTATGGTATAGACCTCCTGAATTGCTTCTTGGATCAACAAAATATGGTCCAGCTGTAGACATGTGGTCTGTTGGTTGTATTTTTGCAGAGCTTCTACATGGGAAGCCAATATTCCCTGGCAAGGACGAGCCGGAACAATTAAATAAGATCTTTGAGCTATGTGGCGCTCCGGATGAAGTCAATTGGCCCGGGGTTTCTAAAATCCCATGGTACAACAATTTCAAGCCCACAAGGCCGATGAAGAGACGTCTTAGAGAAGTTTTCAGGCATTTTGACCGTCATGCTTTAGAGCTGTTGGAGAAGATGCTCACTCTTGATCCTTCTCAGAGGATATCTGCTAAGGATGCTCTAGATGCGGAGTATTTTTGGACAGACCCATTGCCTTGTGACCCTAAGAGTTTGCCAAAGTACGAATCATCACACGAGTTCCAGACTAAGAAGAAGCGTCAGCAGCAACGACAACATGAAGAAACTGCAAAGAGACAGAAGTTGCAACACCAGCAGCATTCACGCCTCCCACCTATACAGCAGTCGGGACAAGCTCATGCACAGATGCGACCAGTACCTAACCAACCCCTTCATGGTTCTCAACCCTCCGTTGCTGCAGGGCCTAGCCATCATTTTGGTGGGAAGCCTCGTGGACCCCCAGGTCCTGGTAGGTATCCCTCTGGTGGAAATCCTCCTTCTGGATACAACCACCCAAGTCGTAGTGGTCAAAGCGGGGGTTCTTATGGCAATGCACAATACGCTCAAGGACGAGGTGCACCATATGGTTCTGGTAATATGTCTGGTGCTGGTCCTCGTGGCGGAGCTGGAGGTGGTGGTGGTGGTTATGGCGCGGGAGCTCCAAATTACCCACAGAATGGTCCATATGCTGGTAGTTCTGGTACTGGGCGTGGCTCCAATGCAATGGGCGGAAACCGAAACCAACAATATGGATGGCAACAATGA 2067 47.65 MSLEPGSRQSQRQTSQNASFNLIRRKTGNPKSSTNPLPRLSDSAAPNSTTSLSDSDFFLFQLSFLQAEISDSFSDLRCTVTPPLIAYLSPISFSVAAVAFAFAPPYLPLCCNLTPSSQEFPTERESLVPRLPERRLRVQGKAMALTAPGQLNVNESPSWGSRGVDCFEKLEQIGEGTYGQVYMARELRTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIKLKEIVTSPGPEKDEQGKPGIFSVFICSISLQWLIFVLFICVEFSCIDGNKYKGGIYMVFEYMDHDLTGLADRPGMRFSVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGNLKLADFGLARSFSNDINANLTNRVITLWYRPPELLLGSTKYGPAVDMWSVGCIFAELLHGKPIFPGKDEPEQLNKIFELCGAPDEVNWPGVSKIPWYNNFKPTRPMKRRLREVFRHFDRHALELLEKMLTLDPSQRISAKDALDAEYFWTDPLPCDPKSLPKYESSHEFQTKKKRQQQRQHEETAKRQKLQHQQHSRLPPIQQSGQAHAQMRPVPNQPLHGSQPSVAAGPSHHFGGKPRGPPGPGRYPSGGNPPSGYNHPSRSGQSGGSYGNAQYAQGRGAPYGSGNMSGAGPRGGAGGGGGGYGAGAPNYPQNGPYAGSSGTGRGSNAMGGNRNQQYGWQQ 688
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17343136 17348890 - CmaCh04G025320.1 Cma04g02532 293613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02532 688 MobiDBLite consensus disorder prediction 1 47 - -
Cma04g02532 688 MobiDBLite consensus disorder prediction 505 688 - -
Cma04g02532 688 MobiDBLite consensus disorder prediction 540 570 - -
Cma04g02532 688 Pfam Protein kinase domain 167 494 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g02532 688 Gene3D Phosphorylase Kinase; domain 1 154 253 - -
Cma04g02532 688 MobiDBLite consensus disorder prediction 507 536 - -
Cma04g02532 688 ProSitePatterns Serine/Threonine protein kinases active-site signature. 329 341 IPR008271 GO:0004672|GO:0006468
Cma04g02532 688 Gene3D Transferase(Phosphotransferase) domain 1 292 534 - -
Cma04g02532 688 SMART serkin_6 167 494 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g02532 688 SUPERFAMILY Protein kinase-like (PK-like) 163 502 IPR011009 -
Cma04g02532 688 MobiDBLite consensus disorder prediction 660 688 - -
Cma04g02532 688 Coils Coil 519 539 - -
Cma04g02532 688 ProSiteProfiles Protein kinase domain profile. 167 494 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g02532 688 MobiDBLite consensus disorder prediction 600 619 - -
Cma04g02532 688 ProSitePatterns Protein kinases ATP-binding region signature. 173 196 IPR017441 GO:0005524
Cma04g02532 688 PANTHER CYCLIN-DEPENDENT KINASE C-2 147 623 - -
Cma04g02532 688 CDD STKc_CDK9_like 167 494 - -
Cma04g02532 688 PANTHER CELL DIVISION PROTEIN KINASE 147 623 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02532 Cma-Chr4:17343136 Cma20g00021 Cma-Chr20:74064 0 dispersed
Cma04g02532 Cma-Chr4:17343136 Cma01g00843 Cma-Chr1:4632630 6.61E-115 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68548 PF00069 Pkinase 5.90E-72 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02532 K08819 - csv:101220936 933.324