Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02549 ATGTTGGCTGCCATTGCCATTCTGTTGTTCAGCTGGTTTTTGAACTCCTCTCTGCCTTCTATGGCAGCTTTCAGTTTCAATCTCACTGACCCACATCTTCTTCCAGATCCTGAAACTGTTGCTTATGAAGTTCAGAGGAGTGTGAATGATTCATTTTCAAGAAGGGAAATGCTGTCGATTCACTCTAAAGGTCAATCAAATTCCTGTCAAACCGGAAACCCTATCGATGATTGTTGGCGCTGCGGTTCAAACTGGCAAGCCAATCGCCAACGGCTTGCAGATTGCAGCATTGGATTTGGCCGAAACGCCATGGGAGGTAAAGGAGGTCAGATCTACATAGTTACAGATTCCTCCGATACTGACCCTGTAAACCCTCGCCCTGGAACTCTCCGCTACGCTGTGGTTCAAGATGAACCTCTCTGGATCGTCTTCGCTGCAGATATGACAATCAAACTCAAGTACGAACTCATGATGAACAGTTACAAAACCCTAGATGGCCGCGGCGCTAATGTCCACATAACCGGCGGCGGTTGCATCACACTTCAGTACATCTCGAATGTAATCATCCACAACATCAACATTCATCACTGTATCCCTACCGGTCACACTAACGTCCGATCAAGCCCTACGCACGTCGGATACAGAGGAAAGTCCGATGGCGATGGAATCTCAATCTTCAGCTCGCGCAACATCTGGATCGATCATTGCTCCTTATCGTACTGTACCGACGGCTTAATCGACGCCATAATGGGATCGACCGGAATCACGATCTCGAACAACTACTTCTCCCACCACGACGAGGTGATGCTGCTGGGGCATGAGGACGGCTATACGCCGGACTCGGGGATGCAGGTGACGATTGCGTTTAATTTGTTCGGCGAGAAGCTGGTTCAGCGGATGCCGCGGTGCCGGCGGGGTTATATACACGTGGTCAACAACGAGTTCCGGTCGTGGGAGATGTACGCCATCGGCGGTAGCGGTGGTCCGACGATCAATAGCCAAGGGAATCGGTATATTGCACCGGGGAATCCCAATGCGAAGGAGGTGACGAAGCGCGTGGACACAAACGCGGGGGATTGGTCGGAATGGAACTGGAGGACGGAGGGGGACATTATGGTAAATGGCGCATTTTTTGTGCCGTCCGGCGAAGGACTGAGCAATATGTACGTTAAAGCTTCGAGTGTGGCGCCCAAATCCGCCGCTCTTGTTGACCAGCTCACTCTTAACGCCGGCGTCTTCGGCGGGACCAGGGAGAGTAGACAGAGCAGCTCGTACTCTGGAGACGAGAGCTTTTCCAATTCCGGGTCCAGTGGCAGCGACGGCGGTGGTGACTACTTCGGGATGATATTCGGCGGGGGCGGTGTGAACAGTGCACTGCCACCATCTCTTTCAGTTGTTAACATGGTCGTTCTAACCCTGCTTACTATTTTAGTTCTGTACACAAACTCCATTTATAATGCTTTATTATCATTGACAGCATTGTAG 1485 51.11 MLAAIAILLFSWFLNSSLPSMAAFSFNLTDPHLLPDPETVAYEVQRSVNDSFSRREMLSIHSKGQSNSCQTGNPIDDCWRCGSNWQANRQRLADCSIGFGRNAMGGKGGQIYIVTDSSDTDPVNPRPGTLRYAVVQDEPLWIVFAADMTIKLKYELMMNSYKTLDGRGANVHITGGGCITLQYISNVIIHNINIHHCIPTGHTNVRSSPTHVGYRGKSDGDGISIFSSRNIWIDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHDEVMLLGHEDGYTPDSGMQVTIAFNLFGEKLVQRMPRCRRGYIHVVNNEFRSWEMYAIGGSGGPTINSQGNRYIAPGNPNAKEVTKRVDTNAGDWSEWNWRTEGDIMVNGAFFVPSGEGLSNMYVKASSVAPKSAALVDQLTLNAGVFGGTRESRQSSSYSGDESFSNSGSSGSDGGGDYFGMIFGGGGVNSALPPSLSVVNMVVLTLLTILVLYTNSIYNALLSLTAL 494
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17458857 17462289 + CmaCh04G025490.1 Cma04g02549 293630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02549 494 PANTHER PECTATE LYASE 6 432 - -
Cma04g02549 494 Gene3D - 72 414 IPR012334 -
Cma04g02549 494 PANTHER PECTATE LYASE 18-RELATED 6 432 IPR045032 GO:0030570
Cma04g02549 494 SMART amb_all 147 344 IPR002022 -
Cma04g02549 494 MobiDBLite consensus disorder prediction 416 438 - -
Cma04g02549 494 PRINTS Pollen allergen Amb family signature 95 112 IPR018082 -
Cma04g02549 494 PRINTS Pollen allergen Amb family signature 119 144 IPR018082 -
Cma04g02549 494 PRINTS Pollen allergen Amb family signature 155 171 IPR018082 -
Cma04g02549 494 PRINTS Pollen allergen Amb family signature 219 240 IPR018082 -
Cma04g02549 494 PRINTS Pollen allergen Amb family signature 299 318 IPR018082 -
Cma04g02549 494 PRINTS Pollen allergen Amb family signature 321 340 IPR018082 -
Cma04g02549 494 PRINTS Pollen allergen Amb family signature 363 387 IPR018082 -
Cma04g02549 494 PRINTS Pollen allergen Amb family signature 392 415 IPR018082 -
Cma04g02549 494 Pfam Pectate lyase 155 324 IPR002022 -
Cma04g02549 494 SUPERFAMILY Pectin lyase-like 73 412 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01203 Cma-Chr3:8019595 Cma04g02549 Cma-Chr4:17458857 0 dispersed
Cma04g02549 Cma-Chr4:17458857 Cma19g00136 Cma-Chr19:853549 0 dispersed
Cma15g00500 Cma-Chr15:2246288 Cma04g02549 Cma-Chr4:17458857 0 wgd
Cma18g00911 Cma-Chr18:7813567 Cma04g02549 Cma-Chr4:17458857 0 wgd
Cma04g01392 Cma-Chr4:7107387 Cma04g02549 Cma-Chr4:17458857 0 wgd
Cma04g02549 Cma-Chr4:17458857 Cma07g00892 Cma-Chr7:4221789 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02549 K01728 - csv:101207535 826.624